PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023901548.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

M-type_MADS

Protein Properties

Length: 470aa MW: 50576.2 Da PI: 9.6049

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023901548.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	80.8	9e-26	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i +++nr+vtf kR+ g++KKA+ELSvLC ++vaviif+++ kly+yss XP_023901548.1 9 KPIRDDRNRSVTFLKRKGGLFKKAHELSVLCSVDVAVIIFGHNKKLYDYSS 59 6899*********************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence
MGRRKIEIKP IRDDRNRSVT FLKRKGGLFK KAHELSVLCS VDVAVIIFGH NKKLYDYSSS 60 DIGDIVGRFQ YYGGAHEHKG PADFVDKNGG GDDDDDDDAG GEEGTAPYAP PAPPPHQHMQ 120 QAYLQDNRRA SMPPAFSPQP PPQANMSRHQ PQEQLQIPPQ GRPPNQSPQP HHRPTPSPQP 180 PQNEFASPPL PQPKPLPAHA KSHSIFTPID DSRSMLAQHW TSSNPAEMPR SDPVVKMEGA 240 APRPASVDVA TIQRGKAKAA SPRPPPARGA TNKSPLPAQK SKDSPRAPAA RVGGKSTANQ 300 SEAKRPRLKV QIPSEQSGDE GGTASGQEDQ SAGQTTAESQ QQGPSHGVVL PPPSPSAGAL 360 LSAGAQGPPN PFARPAPPMS TNPHAMRESN HIETPISALP SRFMSDNLLP SPSTFYPEWG 420 FGRSGDSNML PSPLNFQTPV VPNGQGWREE DRKRANDEEL AGNDPKRSKT

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence

MGRRKIEIKP IRDDRNRSVT FLKRKGGLFK KAHELSVLCS VDVAVIIFGH NKKLYDYSSS  60
DIGDIVGRFQ YYGGAHEHKG PADFVDKNGG GDDDDDDDAG GEEGTAPYAP PAPPPHQHMQ  120
QAYLQDNRRA SMPPAFSPQP PPQANMSRHQ PQEQLQIPPQ GRPPNQSPQP HHRPTPSPQP  180
PQNEFASPPL PQPKPLPAHA KSHSIFTPID DSRSMLAQHW TSSNPAEMPR SDPVVKMEGA  240
APRPASVDVA TIQRGKAKAA SPRPPPARGA TNKSPLPAQK SKDSPRAPAA RVGGKSTANQ  300
SEAKRPRLKV QIPSEQSGDE GGTASGQEDQ SAGQTTAESQ QQGPSHGVVL PPPSPSAGAL  360
LSAGAQGPPN PFARPAPPMS TNPHAMRESN HIETPISALP SRFMSDNLLP SPSTFYPEWG  420
FGRSGDSNML PSPLNFQTPV VPNGQGWREE DRKRANDEEL AGNDPKRSKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57390.1	4e-20	MIKC_MADS family protein