PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023900705.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C3H

Protein Properties

Length: 411aa MW: 44992.7 Da PI: 8.6871

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023900705.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.7	1.4e-11	21	47	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p XP_023900705.1 21 PGEPDCSYYIRTGLCRFGATCRFNHPP 47 5789*********************97 PP
2	zf-CCCH	38.9	1.4e-12	68	92	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ XP_023900705.1 68 QPECQYYLKTGTCKFGATCKFHHPR 92 799********************96 PP
3	zf-CCCH	37.2	5e-12	114	138	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ XP_023900705.1 114 EAECAYYLRTGQCKFGNTCKFHHPQ 138 689********************97 PP
4	zf-CCCH	39.3	1.1e-12	272	298	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG CkyG+ C+F+H++ XP_023900705.1 272 PGQPECQFYMKTGDCKYGAVCRFHHPR 298 5789*********************96 PP
5	zf-CCCH	40.3	5.4e-13	318	344	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ XP_023900705.1 318 PGEPLCIFYSRYGICKFGPSCKFDHPM 344 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MWQMNLRSSE TMESGPYPER PGEPDCSYYI RTGLCRFGAT CRFNHPPNRK LAIATARMKG 60 EFPERIGQPE CQYYLKTGTC KFGATCKFHH PRDKAGIAGR VALNILGYPL RPNEAECAYY 120 LRTGQCKFGN TCKFHHPQPT NMMVSLNGST VYPTVQSPTT GQQSYAGGIT NWSRASFIPS 180 PRWQGPSSYA PLLLHQGMVS VPGWNAYGGQ LGSVSSSETQ QQTVANSQIY GTSRQGESTS 240 AGSQGTFSPF RSGSVPVGFY ALQRENVFPE RPGQPECQFY MKTGDCKYGA VCRFHHPRER 300 LIPAPDCVLS TIGLPLRPGE PLCIFYSRYG ICKFGPSCKF DHPMGIFAYN ISASSSADAP 360 VRRLLGSSSG TAALNLSSEG LVDAGSAKPR RLSLSESRQM PSGDDNIDTE E

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MWQMNLRSSE TMESGPYPER PGEPDCSYYI RTGLCRFGAT CRFNHPPNRK LAIATARMKG  60
EFPERIGQPE CQYYLKTGTC KFGATCKFHH PRDKAGIAGR VALNILGYPL RPNEAECAYY  120
LRTGQCKFGN TCKFHHPQPT NMMVSLNGST VYPTVQSPTT GQQSYAGGIT NWSRASFIPS  180
PRWQGPSSYA PLLLHQGMVS VPGWNAYGGQ LGSVSSSETQ QQTVANSQIY GTSRQGESTS  240
AGSQGTFSPF RSGSVPVGFY ALQRENVFPE RPGQPECQFY MKTGDCKYGA VCRFHHPRER  300
LIPAPDCVLS TIGLPLRPGE PLCIFYSRYG ICKFGPSCKF DHPMGIFAYN ISASSSADAP  360
VRRLLGSSSG TAALNLSSEG LVDAGSAKPR RLSLSESRQM PSGDDNIDTE E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	0.0	C3H family protein