PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023900016.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family GRAS
Protein Properties Length: 381aa    MW: 42196 Da    PI: 6.757
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023900016.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS351.31.6e-10763803373
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     + ++++A+ +s+g+ + a+++L+rl   ++p+g++ +Rl +y + AL++r+++    + +  p+ e      +e++ +++l++++sP++ +++++
  XP_023900016.1   6 QCIIDAATNISEGKSQVASEILTRLARFSNPKGNSEERLMSYWVSALKSRVNS----VENPPPVGEL---FYKEHVESTQLLYDMSPCFMLGFMA 93 
                     67899***********************************************9....4444444444...4999999****************** PP

            GRAS  98 aNqaIleavege...........ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                     aN aIlea+  e           +++H+iDfdi+qG+Q++ Ll+aLa+R++g+   ++iT+v++++  s+e+l ++g+ L++ A+++gv f f++
  XP_023900016.1  94 ANLAILEATLDEsdtksdnnnrgNKIHVIDFDIGQGGQYVYLLHALAARQNGKSfIVKITAVADNS--SQERLTKVGNALTQEAKKVGVCFAFKT 186
                     ********97766777778888899*************************887769********55..*************************** PP

            GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                     ++  +l +l+ e+L ++p+E+l+Vn++++l+r+ desvs +++rde+L+ vk+l P+vv++veqe+++n+++F++r++e+++yy alfds+ea++
  XP_023900016.1 187 VTILKLGELTRESLGCEPDESLVVNFAFKLYRMADESVSRDNPRDELLRRVKGLGPRVVILVEQEMNTNTAPFMARVTETCSYYGALFDSFEATM 281
                     *********************************************************************************************** PP

            GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLv 368
                      r+++er+k+E+  lgr++ n vaceg++r+er+e ++kWr+r+++aGF+  +ls+++ ++ k+ l   +  + g++v +++g +++gW++r+L+
  XP_023900016.1 282 KRDNSERVKIEEG-LGRKLGNSVACEGRDRVERCEVFGKWRARMGMAGFELKSLSQNVSETLKAKLTAENrvNPGFTVTDQNGGVCIGWMGRTLT 375
                     *************.********************************************9999987766555789********************* PP

            GRAS 369 svSaW 373
                     ++SaW
  XP_023900016.1 376 VASAW 380
                     ***** PP
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    
MTSSEQCIID AATNISEGKS QVASEILTRL ARFSNPKGNS EERLMSYWVS ALKSRVNSVE  60
NPPPVGELFY KEHVESTQLL YDMSPCFMLG FMAANLAILE ATLDESDTKS DNNNRGNKIH  120
VIDFDIGQGG QYVYLLHALA ARQNGKSFIV KITAVADNSS QERLTKVGNA LTQEAKKVGV  180
CFAFKTVTIL KLGELTRESL GCEPDESLVV NFAFKLYRMA DESVSRDNPR DELLRRVKGL  240
GPRVVILVEQ EMNTNTAPFM ARVTETCSYY GALFDSFEAT MKRDNSERVK IEEGLGRKLG  300
NSVACEGRDR VERCEVFGKW RARMGMAGFE LKSLSQNVSE TLKAKLTAEN RVNPGFTVTD  360
QNGGVCIGWM GRTLTVASAW S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-158GRAS family protein