PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023899880.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family MYB_related
Protein Properties Length: 289aa    MW: 33304.2 Da    PI: 7.1467
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023899880.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.33.1e-12120164347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ +  ++G+g+W+ I+r     +t+ q+ s+ qky
   XP_023899880.1 120 PWTEEEHRRFLMGLLKYGKGDWRNISRNYVISKTPTQVASHAQKY 164
                      8*****************************789***********9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    
METLYPASFM SSSNWFMSTE WTKEENKAFE SALAMFDQES PDRWVHIAQM IPGKTVWDVM  60
KKYEELIDDV KDIEEGRVPI PVYLASSFTL ELVDDRNFDA YRKRSSRAGG PDQERKKGVP  120
WTEEEHRRFL MGLLKYGKGD WRNISRNYVI SKTPTQVASH AQKYFIRQHS GGKDKRRPSI  180
HDITTVNLTD TTSEDNKPPS YDQSSVFQPQ QKPPSTPRMS LDWNQPNDEA VMVFGATHGN  240
HLMSSPYEFG SNDFKVQGHN LYGSAHYGAL IKPHNSVFQF QPSRYQIHG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05790.14e-85MYB family protein