PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023899428.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 811aa MW: 88123.6 Da PI: 6.1452

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023899428.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	25.7	2.8e-08	562	584	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F+r +nL++H+rtH XP_023899428.1 562 FQCTLCPKRFTRAYNLRSHLRTH 584 89********************9 PP
2	zf-C2H2	16.3	2.7e-05	590	611	1	22
EEETTTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt 22 ++C+ Cgk F r+++ krH + XP_023899428.1 590 FVCTVCGKAFARQHDRKRHEGL 611 89*****************755 PP

Sequence ? help Back to Top
Protein Sequence Length: 811 aa Download sequence
MDVSSHDIYE RRRSPSAGHV NHSDIQLQAA SSQPLLSLDD SFDPNSLIFD NTNLDPYAAN 60 GAGLDPTFPS GTQSHGQFSL GPVYPNVQQE LQQQPQQQQQ QQQRIPPHLT THNSNFSEHS 120 FTQSNGLSPQ DTGHFSSQGS NHVSPSSMNN ESSAFPSFDF NSTDLNQAGF DQHASLDPTL 180 LDGVNGSGFD SQAGLLDNMA STMASHSPPP PHLTADMSVR RHSGSPSPRA SPGFQQTSAF 240 NGQSDNRPRN LSESLDPSSA MFPQGQGNEW SAMGPYRGAH RRTPSDNYSD ISSTHNSPYL 300 GTLDSFDANA HSSPMLNPTS DPSFAGDLGM QSFTLNESQV SSQPNYNGYS PGHSPQPSPR 360 LSTQQAAMAS LTSDNNYGLN LNLNGQFSQP QLTGADMFPG NGHEPFPSLN NQQSPGGELG 420 LADQMSPPEI NIDFVPDSKN PMEPVRSTHG DDTLSPPQRT GRARSKSDSQ ASPRPASPGL 480 MARGRSPSLQ EQQSNSLSPL PNGASSAASS RSTSPARGRN GSIGSRNRSH SASDNRDYIL 540 DLANLERSPS NQGRVQKHPA TFQCTLCPKR FTRAYNLRSH LRTHTDERPF VCTVCGKAFA 600 RQHDRKRHEG LHSGEKKFVC RGTLQSGPQW GCGRRFARAD ALGRHFRSEA GRVCIKPLLD 660 EEAAERQKVW MQEQQSQVNQ QQGMLTQPQL DPLMGGFLPQ ALLQQYPALA GLDWSTIPQG 720 PPPEEGDISG RSSYDASSGG EYYDEASENE MSSYPDPSNM QHMGDLNMNT GMNSHQQQQL 780 NFMATNNAGG TGYVTNHTHN TSDYLSDFEG R

Sequence ? help Back to Top

Protein Sequence Length: 811 aa Download sequence

MDVSSHDIYE RRRSPSAGHV NHSDIQLQAA SSQPLLSLDD SFDPNSLIFD NTNLDPYAAN  60
GAGLDPTFPS GTQSHGQFSL GPVYPNVQQE LQQQPQQQQQ QQQRIPPHLT THNSNFSEHS  120
FTQSNGLSPQ DTGHFSSQGS NHVSPSSMNN ESSAFPSFDF NSTDLNQAGF DQHASLDPTL  180
LDGVNGSGFD SQAGLLDNMA STMASHSPPP PHLTADMSVR RHSGSPSPRA SPGFQQTSAF  240
NGQSDNRPRN LSESLDPSSA MFPQGQGNEW SAMGPYRGAH RRTPSDNYSD ISSTHNSPYL  300
GTLDSFDANA HSSPMLNPTS DPSFAGDLGM QSFTLNESQV SSQPNYNGYS PGHSPQPSPR  360
LSTQQAAMAS LTSDNNYGLN LNLNGQFSQP QLTGADMFPG NGHEPFPSLN NQQSPGGELG  420
LADQMSPPEI NIDFVPDSKN PMEPVRSTHG DDTLSPPQRT GRARSKSDSQ ASPRPASPGL  480
MARGRSPSLQ EQQSNSLSPL PNGASSAASS RSTSPARGRN GSIGSRNRSH SASDNRDYIL  540
DLANLERSPS NQGRVQKHPA TFQCTLCPKR FTRAYNLRSH LRTHTDERPF VCTVCGKAFA  600
RQHDRKRHEG LHSGEKKFVC RGTLQSGPQW GCGRRFARAD ALGRHFRSEA GRVCIKPLLD  660
EEAAERQKVW MQEQQSQVNQ QQGMLTQPQL DPLMGGFLPQ ALLQQYPALA GLDWSTIPQG  720
PPPEEGDISG RSSYDASSGG EYYDEASENE MSSYPDPSNM QHMGDLNMNT GMNSHQQQQL  780
NFMATNNAGG TGYVTNHTHN TSDYLSDFEG R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	4e-09	C2H2 family protein