PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023897327.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

SBP

Protein Properties

Length: 797aa MW: 89080.8 Da PI: 5.9894

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023897327.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	117.1	9.3e-37	134	210	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv+gCead+se+k yhrrh+vC +++a++v+++g ++r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k XP_023897327.1 134 RCQVPGCEADISELKGYHRRHRVCLRCANASEVFLDGDTKRYCQQCGKFHILSDFDEGKRSCRRKLERHNNRRRRKP 210 6************************************************************************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 797 aa Download sequence
MEPPRVMEVH PAMTEEDPTS ALWDFGDLLD FTVDGHFSMS LDPDQLPSPP PQTPPPIIDQ 60 SLDFSQEDSQ VDTNPPGPSS GKIRKRDPRL TCTNYLAGRI PCACPEMDEK LELEGSLRGK 120 KRSRTVRVPT RTARCQVPGC EADISELKGY HRRHRVCLRC ANASEVFLDG DTKRYCQQCG 180 KFHILSDFDE GKRSCRRKLE RHNNRRRRKP ADSGIADEKE PQGSLQTEDG PCDDETGKDS 240 LCLSSPIAET EAFLESEDGQ VTTLCSALDS QNIHGDASFT ASGETQMDGG KDNSKCSLSQ 300 LYDNKNDYSS MCPTGRISFK LYDWNPAEFP RRLRHQIFQW LANMPVELEG YIRPGCTILT 360 VFITMPKFMW AKLFEDPASY LLDFVAPGRM LSGKGTILVF MNDMIFRVMK GGTSVMKLKV 420 EVQAPRLHYV HPTCFEAGKP MEFVACGSNL IQSKFRFLVS FAGKYLAHDY CVASKHGWTE 480 GDTASSFNHQ LYKICIPETE PDLCGPAFVE VENESGLSNF IPILIGDKEI CAEMEILQQR 540 FDASPFLNES ESAAIGPMSV LCEVSALRQS TFSEFLLDVA WLIKEPASEN FQQFITASQI 600 QRFNSLLSFL MCNDSTTILE KLLQKLKIVI SNMEFNSVAK GTFDADLSLL QKYLDNARAI 660 LCKKHKKSES SMQSGALPKG DHFSESRFQE NVLSVPINRK DMEIITNDKL GVETCSASTC 720 KSETVPLLNR EVIMNVDPAW PRKSCGRIFS GAILGSRPGI FVIGFAAVCL GMCAVLLHPH 780 KVSEFAVSIR RCLFDRI

Sequence ? help Back to Top

Protein Sequence Length: 797 aa Download sequence

MEPPRVMEVH PAMTEEDPTS ALWDFGDLLD FTVDGHFSMS LDPDQLPSPP PQTPPPIIDQ  60
SLDFSQEDSQ VDTNPPGPSS GKIRKRDPRL TCTNYLAGRI PCACPEMDEK LELEGSLRGK  120
KRSRTVRVPT RTARCQVPGC EADISELKGY HRRHRVCLRC ANASEVFLDG DTKRYCQQCG  180
KFHILSDFDE GKRSCRRKLE RHNNRRRRKP ADSGIADEKE PQGSLQTEDG PCDDETGKDS  240
LCLSSPIAET EAFLESEDGQ VTTLCSALDS QNIHGDASFT ASGETQMDGG KDNSKCSLSQ  300
LYDNKNDYSS MCPTGRISFK LYDWNPAEFP RRLRHQIFQW LANMPVELEG YIRPGCTILT  360
VFITMPKFMW AKLFEDPASY LLDFVAPGRM LSGKGTILVF MNDMIFRVMK GGTSVMKLKV  420
EVQAPRLHYV HPTCFEAGKP MEFVACGSNL IQSKFRFLVS FAGKYLAHDY CVASKHGWTE  480
GDTASSFNHQ LYKICIPETE PDLCGPAFVE VENESGLSNF IPILIGDKEI CAEMEILQQR  540
FDASPFLNES ESAAIGPMSV LCEVSALRQS TFSEFLLDVA WLIKEPASEN FQQFITASQI  600
QRFNSLLSFL MCNDSTTILE KLLQKLKIVI SNMEFNSVAK GTFDADLSLL QKYLDNARAI  660
LCKKHKKSES SMQSGALPKG DHFSESRFQE NVLSVPINRK DMEIITNDKL GVETCSASTC  720
KSETVPLLNR EVIMNVDPAW PRKSCGRIFS GAILGSRPGI FVIGFAAVCL GMCAVLLHPH  780
KVSEFAVSIR RCLFDRI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	196	208	RRKLERHNNRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.1	0.0	SBP family protein