PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023897178.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB_related

Protein Properties

Length: 601aa MW: 69950.4 Da PI: 7.8554

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023897178.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.2	1.6e-07	393	434	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE el+ +k++G++ Wk+ a +g + + ++k+ w+ XP_023897178.1 393 KRKWTQEEYELIRSFHKKHGSE-WKLMADALG--KHRFHVKDTWR 434 579*****************.******9..56777887776 PP

Sequence ? help Back to Top
Protein Sequence Length: 601 aa Download sequence
MGKKTLEGYK SKKDWGYEAD ILEVNGSEND VLMRVEEGIK MSCEDERRNE ERKEKKKKHK 60 KEKSKDGIET ALYVNEILES NTTDELLEGQ DSFKKRDDDG KKDGKESNEK KEKKKKKHKE 120 EKNKDGIVTA SYVNEILEDN KVDELVKGQD SFGKRDNDEM KHGKEAGEKK EKKKKKHKEE 180 KSKDGIETAS YTNETLENNK VDELVKGHNS FGKRDDDETE HGKVVDKKGK KRKRDTEGGD 240 VTVKNSMGKE REVSDRKNTE KVEPTKKKGR KDIQTSDLNE NSPLKRTPKR VSFSDNVVVF 300 SSSDAPIEGN SDQDDSLVRG KRFSQEEDEM VKKAVFDYIE EHQLGDEGLN MVLHCKSHRK 360 TKNCWKEIGA ALPWRPTESV YYRAHILFER GEKRKWTQEE YELIRSFHKK HGSEWKLMAD 420 ALGKHRFHVK DTWRRIKLPN SKKGRWSQEE YQNLFDLVNL DLRMKATEEK KSKHGMLRDN 480 IAWQAISDKL STRSNVLCCM KWYNQLTSPM VSEGLWADAD DYRLLDALYS LDACCIEDVD 540 WDDLLEHRSG EVCQKRWDQM VKHIGEHSNK SFAEQVEVLS KRYHPDVLEA REAYDSKPAV 600 S

Sequence ? help Back to Top

Protein Sequence Length: 601 aa Download sequence

MGKKTLEGYK SKKDWGYEAD ILEVNGSEND VLMRVEEGIK MSCEDERRNE ERKEKKKKHK  60
KEKSKDGIET ALYVNEILES NTTDELLEGQ DSFKKRDDDG KKDGKESNEK KEKKKKKHKE  120
EKNKDGIVTA SYVNEILEDN KVDELVKGQD SFGKRDNDEM KHGKEAGEKK EKKKKKHKEE  180
KSKDGIETAS YTNETLENNK VDELVKGHNS FGKRDDDETE HGKVVDKKGK KRKRDTEGGD  240
VTVKNSMGKE REVSDRKNTE KVEPTKKKGR KDIQTSDLNE NSPLKRTPKR VSFSDNVVVF  300
SSSDAPIEGN SDQDDSLVRG KRFSQEEDEM VKKAVFDYIE EHQLGDEGLN MVLHCKSHRK  360
TKNCWKEIGA ALPWRPTESV YYRAHILFER GEKRKWTQEE YELIRSFHKK HGSEWKLMAD  420
ALGKHRFHVK DTWRRIKLPN SKKGRWSQEE YQNLFDLVNL DLRMKATEEK KSKHGMLRDN  480
IAWQAISDKL STRSNVLCCM KWYNQLTSPM VSEGLWADAD DYRLLDALYS LDACCIEDVD  540
WDDLLEHRSG EVCQKRWDQM VKHIGEHSNK SFAEQVEVLS KRYHPDVLEA REAYDSKPAV  600
S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	94	116	KKRDDDGKKDGKESNEKKEKKKK
2	227	271	KKGKKRKRDTEGGDVTVKNSMGKEREVSDRKNTEKVEPTKKKGRK
3	230	274	KKGKKRKRDTEGGDVTVKNSMGKEREVSDRKNTEKVEPTKKKGRK
4	231	275	KKGKKRKRDTEGGDVTVKNSMGKEREVSDRKNTEKVEPTKKKGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41020.1	1e-120	MYB_related family protein