PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023896624.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

bHLH

Protein Properties

Length: 398aa MW: 45270.5 Da PI: 6.4629

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023896624.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.7	4.2e-13	205	256	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P + + ++ + a+i A++++k+L+ XP_023896624.1 205 QRMTHIAVERNRRRQMNDHLNVLRSLMPAS---YIQRGDQASIIGGAIDFVKELE 256 79**************************...9****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence
MKVFILLPLE FFGDHSDLGC LEQEFVTTES LKIEEEAAHF SNSMLEDKMP FLQMLQSVGS 60 PHFLPFKEPS FQTLLRLQHL KKPCEVYTYF PEMETQIQAL ELESCVTNDI VELHSPMKSE 120 TMHIQHPHSA SYLEATVSSE CNQEKPNSAE KHCIESNSGS PPPWANPQSW PKHTQFSKSL 180 PIVTRERKKR KRARPTKNKE EVENQRMTHI AVERNRRRQM NDHLNVLRSL MPASYIQRGD 240 QASIIGGAID FVKELEQLLH SLEAQKRMRK NKEGNESSTV VPSDGFFILP QCRIGSDEGN 300 CGEEVKAENK SEVAEIEVTV IQTHVNLKIH SQRRPGQLLK AIVALEDLRL TVLHLNITSS 360 ESSVLYSFNL KMEDECKLGS ADEIASKVHQ IFSLINGS

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence

MKVFILLPLE FFGDHSDLGC LEQEFVTTES LKIEEEAAHF SNSMLEDKMP FLQMLQSVGS  60
PHFLPFKEPS FQTLLRLQHL KKPCEVYTYF PEMETQIQAL ELESCVTNDI VELHSPMKSE  120
TMHIQHPHSA SYLEATVSSE CNQEKPNSAE KHCIESNSGS PPPWANPQSW PKHTQFSKSL  180
PIVTRERKKR KRARPTKNKE EVENQRMTHI AVERNRRRQM NDHLNVLRSL MPASYIQRGD  240
QASIIGGAID FVKELEQLLH SLEAQKRMRK NKEGNESSTV VPSDGFFILP QCRIGSDEGN  300
CGEEVKAENK SEVAEIEVTV IQTHVNLKIH SQRRPGQLLK AIVALEDLRL TVLHLNITSS  360
ESSVLYSFNL KMEDECKLGS ADEIASKVHQ IFSLINGS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	187	192	RKKRKR
2	206	217	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46810.1	9e-88	bHLH family protein