PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023896398.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

Trihelix

Protein Properties

Length: 397aa MW: 46002.4 Da PI: 4.3965

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023896398.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	49.7	9.5e-16	163	247	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrer.gferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++e+ +L++a ++ + +r++l+ W+ev++k++e ++er+ +qC+++++ l+k+ykk+k ++ + t ++ s+++yf++++ XP_023896398.1 163 WTERETFVLLDAWGDRFLHRGRKSLRSEEWQEVAEKVSEIsKIERTDTQCRNRLDTLKKKYKKEKMRMAE-TGDAMSKWVYFKKMD 247 ***********************************775278**********************9.688888******7 PP

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence
MDDTEDDARY PPNPYAVSYQ QGYGSSSRQK LSVRNAPYSR PVGNQYVDEE DDMDEDDEEE 60 LGEEEETDDL SNGFRNVHKD LMDDDEDEEE DEEEDDDEDD DKQKSFSQRI EDVDLERHPK 120 KRKLKSLVSS YEFAPRVPPP SAAAPPPAAP KPSFGGRNSL TDWTERETFV LLDAWGDRFL 180 HRGRKSLRSE EWQEVAEKVS EISKIERTDT QCRNRLDTLK KKYKKEKMRM AETGDAMSKW 240 VYFKKMDVLL SSPPQQAGLS CGMDSGEYVF MNPKVYLNRA NGLDEMRDSP GNSEPTDREE 300 DDSDGLPPKK RKFGRVNDEG SSFRLLADSI HKFSEIYEKI ETNKRQQMVE LEKMRMDFHR 360 ELEMQKRQIL ERAQTEIAKI RRGDDEENDI SAENASG

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence

MDDTEDDARY PPNPYAVSYQ QGYGSSSRQK LSVRNAPYSR PVGNQYVDEE DDMDEDDEEE  60
LGEEEETDDL SNGFRNVHKD LMDDDEDEEE DEEEDDDEDD DKQKSFSQRI EDVDLERHPK  120
KRKLKSLVSS YEFAPRVPPP SAAAPPPAAP KPSFGGRNSL TDWTERETFV LLDAWGDRFL  180
HRGRKSLRSE EWQEVAEKVS EISKIERTDT QCRNRLDTLK KKYKKEKMRM AETGDAMSKW  240
VYFKKMDVLL SSPPQQAGLS CGMDSGEYVF MNPKVYLNRA NGLDEMRDSP GNSEPTDREE  300
DDSDGLPPKK RKFGRVNDEG SSFRLLADSI HKFSEIYEKI ETNKRQQMVE LEKMRMDFHR  360
ELEMQKRQIL ERAQTEIAKI RRGDDEENDI SAENASG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	4e-73	Trihelix family protein