PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023896329.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family RAV
Protein Properties Length: 368aa    MW: 41754.2 Da    PI: 8.3771
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023896329.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.82e-1170117154
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                     s++kGV    ++g W A+I+       + +r++lg+f t++eAa a++ a+ kl+
  XP_023896329.1  70 SKFKGVV-PQQNGHWGAQIYA------NhRRIWLGTFKTEKEAAMAYDSAAIKLR 117
                     799***6.666899****999......44**********99************98 PP
2B391.46.6e-29192288185
                     EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                     f+k+ltpsdv++++rlv+pkkfa ++             gg+ +e ++l+++d+  rsW+++++y+k+s+++v+t+GW++Fvk+++Lk++D++ F
  XP_023896329.1 192 FQKELTPSDVGSLNRLVIPKKFAVKYfpcisesaednegGGN-KEAVQLIFYDRMMRSWKFRYCYWKSSQSFVFTRGWNRFVKEKKLKANDTISF 285
                     99********************************99996555.4779************************************************ PP

                     EE- CS
              B3  83 kld 85 
                     +l 
  XP_023896329.1 286 YLC 288
                     *75 PP
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    
MVRSRCLLSL TSDMHLNNLG HIRRITMEDD MLSMISNGGV NATAEDSDSS STTYPFPESK  60
RARHGSNASS KFKGVVPQQN GHWGAQIYAN HRRIWLGTFK TEKEAAMAYD SAAIKLRSGD  120
SQRNFPWTDI TVEEPSFQNL YSTEAVLNMI KEGSYQSKFE DFLRTHSHIV ETVDLNLGRV  180
QSKGGLSCKQ LFQKELTPSD VGSLNRLVIP KKFAVKYFPC ISESAEDNEG GGNKEAVQLI  240
FYDRMMRSWK FRYCYWKSSQ SFVFTRGWNR FVKEKKLKAN DTISFYLCEC QEAANDARSF  300
NMIDVNSSDN CGGLVEQANQ YVGIQLDLKL GVSPRIDHKL GEEKELKGPK PTHETEKPCF  360
RLFGVQII
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-109RAV family protein