PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023895909.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family M-type_MADS
Protein Properties Length: 255aa    MW: 29047.1 Da    PI: 6.6757
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023895909.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.11.9e-22959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ien s  qvt++kRr gi+KKA+EL vLCd++v +++fs+tg+l  ++s
  XP_023895909.1  9 KKIENPSSLQVTYCKRRDGIIKKASELAVLCDTDVGLVMFSPTGRLNSFAS 59
                    68*********************************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    
MVRKKVIVKK IENPSSLQVT YCKRRDGIIK KASELAVLCD TDVGLVMFSP TGRLNSFASN  60
GRIEDIFLRY IDRPNELRGG PIENEECLYR SLKNSKYEGE ILEKIAKLKT LGKELHDLNQ  120
LEDEMQQKMR YYNPDVEKIT SIYDALVHQK FLTNAIQRIE EMKAKLLGKQ IVPLEPDSIE  180
VGKEKESQSS EVPVLDIKDS NFMAEESVDS NGRRNPVMED HHQQKTCSLG GPHLSIDYLK  240
TQSNWNLQCG STSQG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.12e-32MIKC_MADS family protein