PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023895370.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 399aa MW: 43134.3 Da PI: 5.7161

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023895370.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.7	1.1e-17	40	85	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l ++v q+G ++W++Iar ++ gR++k+c++rw + XP_023895370.1 40 KGPWSPEEDAVLSRLVSQFGARNWSLIARGIP-GRSGKSCRLRWCNQ 85 79****************************.*********985 PP
2	Myb_DNA-binding	58.9	1.2e-18	92	136	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T eEde++++a++ +G++ W++Ia+ ++ gRt++ +k++w++ XP_023895370.1 92 RKPFTDEEDEIILKAHAVHGNK-WAAIAKLLP-GRTDNAIKNHWNST 136 789*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence
MSEKVEDHSP AAECGAESGD PELVASEGIG GGGGGGGKVK GPWSPEEDAV LSRLVSQFGA 60 RNWSLIARGI PGRSGKSCRL RWCNQLDPCL KRKPFTDEED EIILKAHAVH GNKWAAIAKL 120 LPGRTDNAIK NHWNSTLRRR GADLGMWKME DSSLDRAKVS SEETLSVGVI NSFSPPEGGD 180 VPMEDSPHPC EDKAQTNEEH FVAEEREHPT LSRPVARVSA FNVYNPPGGT NSSVFSRTVP 240 TQGPLVQASK PELGVCKFLQ DVYSEPMVPL QCGHGCCTDS RGGHSHSSLL GPEFVEYIEP 300 PSFSSHELIS IATDLNNIAW IKSGLEKNGV RMPDDAANHR VSEAVAAASQ LGTFEHNMKK 360 DHMGVEEGHN KLMGMMKDVL STQMPRQTFP GPAEVEGLS

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence

MSEKVEDHSP AAECGAESGD PELVASEGIG GGGGGGGKVK GPWSPEEDAV LSRLVSQFGA  60
RNWSLIARGI PGRSGKSCRL RWCNQLDPCL KRKPFTDEED EIILKAHAVH GNKWAAIAKL  120
LPGRTDNAIK NHWNSTLRRR GADLGMWKME DSSLDRAKVS SEETLSVGVI NSFSPPEGGD  180
VPMEDSPHPC EDKAQTNEEH FVAEEREHPT LSRPVARVSA FNVYNPPGGT NSSVFSRTVP  240
TQGPLVQASK PELGVCKFLQ DVYSEPMVPL QCGHGCCTDS RGGHSHSSLL GPEFVEYIEP  300
PSFSSHELIS IATDLNNIAW IKSGLEKNGV RMPDDAANHR VSEAVAAASQ LGTFEHNMKK  360
DHMGVEEGHN KLMGMMKDVL STQMPRQTFP GPAEVEGLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55730.1	1e-107	MYB family protein