PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023894810.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 391aa MW: 43231.3 Da PI: 8.5488

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023894810.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	7.6e-05	154	177	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ Cg+ F+ + L++H+ t H XP_023894810.1 154 FPCTACGEIFPKPQFLEQHQATkH 177 89******************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence
MASVVTFVNK FFSIFILLLH LGCFIFTTTA NDHHQRPYSK KRKVSPLSVS HSSPSKPKKA 60 LSSSWSFLKR IFSSDSCKSN ISSITQTQPT TTPPTPITTT TLSSARSSQH SIVPLIIQPE 120 THSSDPPRKK KSGSCSESDI SADNPFFPLR NDIFPCTACG EIFPKPQFLE QHQATKHAVS 180 ELVDGDSGKN IVRIIFKTGW TDNHKSPILH RILKIHNSPK ILSRFEEYRE TVKAKAARNG 240 AVKRRDERCI ADGNELLRFH CSTFLCDLGL NGSSGICNQQ YCSVCGIVKS GFSPKLDGIS 300 TLSTSWKAHV AIPEEIEQEF SFMNVKRAML VCRVVAGRVG CDSEDVDKED GGFDSVFGRS 360 GDGVHTSVDE EELLVFNPRA VLPCFVIVYT V

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence

MASVVTFVNK FFSIFILLLH LGCFIFTTTA NDHHQRPYSK KRKVSPLSVS HSSPSKPKKA  60
LSSSWSFLKR IFSSDSCKSN ISSITQTQPT TTPPTPITTT TLSSARSSQH SIVPLIIQPE  120
THSSDPPRKK KSGSCSESDI SADNPFFPLR NDIFPCTACG EIFPKPQFLE QHQATKHAVS  180
ELVDGDSGKN IVRIIFKTGW TDNHKSPILH RILKIHNSPK ILSRFEEYRE TVKAKAARNG  240
AVKRRDERCI ADGNELLRFH CSTFLCDLGL NGSSGICNQQ YCSVCGIVKS GFSPKLDGIS  300
TLSTSWKAHV AIPEEIEQEF SFMNVKRAML VCRVVAGRVG CDSEDVDKED GGFDSVFGRS  360
GDGVHTSVDE EELLVFNPRA VLPCFVIVYT V

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	35	43	QRPYSKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29660.1	1e-116	C2H2 family protein