PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023894664.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 349aa MW: 38806.7 Da PI: 6.3093

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023894664.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	62.9	6.4e-20	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lvd+++++G g+W++ ++ g++R++k+c++rw +yl XP_023894664.1 15 KGPWTPEEDQKLVDYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP
2	Myb_DNA-binding	54.9	2e-17	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE+++++++++ lG++ W++Ia ++ gRt++++k++w+++l XP_023894664.1 68 RGKFSEEEEQIIINLHAVLGNK-WSAIATNLP-GRTDNEIKNFWNTHL 113 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MMGRSPSSDE NGLKKGPWTP EEDQKLVDYI QKHGHGSWRA LPKLAGLNRC GKSCRLRWTN 60 YLRPDIKRGK FSEEEEQIII NLHAVLGNKW SAIATNLPGR TDNEIKNFWN THLKKKLLQM 120 GIDPVTHRPR TDLNILSNLP QLLAAANFAN LTNPWDNVLR LQSDATQLAK IQVLNNIIQV 180 LSASPSNIEA INHLVSSSIP EHQLYEYLQM NSKLEGLVNG SVGFPTQSLT QMQVNPPNFE 240 IPQLAQPSAS QPINGLKNCN GNNSDCHQLG TSYFIPPPPS NALPNLVSPS PECSIVSQIE 300 NKINPNDISN PSSTSTTFEP LGDMMDDEAS DSYWKDFIEQ ASSQPWPIS

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MMGRSPSSDE NGLKKGPWTP EEDQKLVDYI QKHGHGSWRA LPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGK FSEEEEQIII NLHAVLGNKW SAIATNLPGR TDNEIKNFWN THLKKKLLQM  120
GIDPVTHRPR TDLNILSNLP QLLAAANFAN LTNPWDNVLR LQSDATQLAK IQVLNNIIQV  180
LSASPSNIEA INHLVSSSIP EHQLYEYLQM NSKLEGLVNG SVGFPTQSLT QMQVNPPNFE  240
IPQLAQPSAS QPINGLKNCN GNNSDCHQLG TSYFIPPPPS NALPNLVSPS PECSIVSQIE  300
NKINPNDISN PSSTSTTFEP LGDMMDDEAS DSYWKDFIEQ ASSQPWPIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	1e-105	MYB family protein