PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023894357.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family M-type_MADS
Protein Properties Length: 365aa    MW: 41615 Da    PI: 6.6725
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023894357.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.92.6e-231054145
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    kr e++snrqvt+skRr+gilKKA EL +LCd+++a+++fs+tg+
  XP_023894357.1 10 KRLESTSNRQVTYSKRRHGILKKARELAILCDIDIALLMFSPTGR 54
                    689****************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    
MMGRVKLKIK RLESTSNRQV TYSKRRHGIL KKARELAILC DIDIALLMFS PTGRSTLYQG  60
ENRNFEEVIA KFSQLTPQER AKRKLESLEA LKKTFKKLDH DVNIEDFLGS SSQTVEELGN  120
RLRLLQVQLT ELQKRLSYWS DPEKIDNVEN LRQMEDLLRE SIQQIRLQKE NFGKHQLASL  180
ECATQFQNGM PLPMLMNSVH DAQSLSWLSN NDNQHMLFPH EPNFLPQRDV ECSSDVSLPG  240
YSGYFSTEKK DAVGNTIQLA HMGSGGGTLD ELSRNTCLSM QLGEQYAYPS YGSSNLLEDT  300
KLKPQMEMNL QVNPLDYQIN SNFGVSRPLC DSGHHSWFSA SAPCSISIYN QNGYQCNQID  360
SQEPH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.11e-97M-type_MADS family protein