PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023893018.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

ARF

Protein Properties

Length: 729aa MW: 80842.3 Da PI: 6.8512

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023893018.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	75.7	5.1e-24	164	264	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++ +k+a+e+ + + + +++l+ +d++g +W++k+i+r++++r++lt+GW++Fv +++L +gD +vF + + XP_023893018.1 164 FCKILTASDTSTHGGFSVLRKHATEClpsldmtQ-V-TPTQELVAKDLHGSEWKFKHIFRGQPRRHLLTTGWSNFVTSKRLVAGDAFVFL--RGD 254 99**************************9633.3.34459********************************************..348 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 ++el+v+v+r XP_023893018.1 255 NGELRVGVRR 264 9999**98 PP
2	Auxin_resp	102.3	5.9e-34	290	369	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+ t++ F v+Y+Pr+ s+F++ v+k+++a+++ +svGmRfkm+fe+eds+err++Gt+vgv d++ +W++SkWrsLk XP_023893018.1 290 ASHAVMTQTLFVVFYKPRT--SQFIIGVNKYLEAVNNAFSVGMRFKMRFEGEDSPERRFTGTIVGVGDISK-EWSDSKWRSLK 369 689*************6..9******************************************777.*******96 PP

Sequence ? help Back to Top
Protein Sequence Length: 729 aa Download sequence
MTFELAFVCW VLFSSSSSSS LFSFVRRCLF VGSSMAHLEG SPGSSSISQA ETGCVNDDLY 60 TELWKLCAGP LVDVPKPGER VFYFPQGHME QLEASTNQGL NQQIPLFNLP PKILCRVVHI 120 RLLAEQESDE VYAQITLQPE ADQNQPSSPD ICPPEPPRQT VHSFCKILTA SDTSTHGGFS 180 VLRKHATECL PSLDMTQVTP TQELVAKDLH GSEWKFKHIF RGQPRRHLLT TGWSNFVTSK 240 RLVAGDAFVF LRGDNGELRV GVRRLARQQS PMPSSVISSQ SMHLGVLATA SHAVMTQTLF 300 VVFYKPRTSQ FIIGVNKYLE AVNNAFSVGM RFKMRFEGED SPERRFTGTI VGVGDISKEW 360 SDSKWRSLKI HWDEPATIPR PERVSPWEVE PFASSASLNL TQPVVKSKRP RPVDIPSSEI 420 TTNSAASAFW FHGSTHSHEL TQLGSAAEVQ SRETCGVWPS SQKEINTNGS CIRTEGIWPS 480 SPHVNVSLDL FSDSPEDNKT VTAHPDYLSP GSSMLNNGPI NDHVEKRTKS KTSLGCRLFG 540 IDLTKNSQTT APPERESAIM ISSSAKGSSS TAIPEADRVH NLDASKSSNE QKQLIPDVSP 600 KETQSKQGST LSMRTRTKVQ MQGVAVGRAV DLTVLKGYND LIDELEKMFE IKGELRTRNK 660 WAVVFTDDEN DKMLVGDDPW PEFVKMVRKI YIYSSEEVKK MSTRCKLNAS SFEGEGTVMS 720 SDSEHGVET

Sequence ? help Back to Top

Protein Sequence Length: 729 aa Download sequence

MTFELAFVCW VLFSSSSSSS LFSFVRRCLF VGSSMAHLEG SPGSSSISQA ETGCVNDDLY  60
TELWKLCAGP LVDVPKPGER VFYFPQGHME QLEASTNQGL NQQIPLFNLP PKILCRVVHI  120
RLLAEQESDE VYAQITLQPE ADQNQPSSPD ICPPEPPRQT VHSFCKILTA SDTSTHGGFS  180
VLRKHATECL PSLDMTQVTP TQELVAKDLH GSEWKFKHIF RGQPRRHLLT TGWSNFVTSK  240
RLVAGDAFVF LRGDNGELRV GVRRLARQQS PMPSSVISSQ SMHLGVLATA SHAVMTQTLF  300
VVFYKPRTSQ FIIGVNKYLE AVNNAFSVGM RFKMRFEGED SPERRFTGTI VGVGDISKEW  360
SDSKWRSLKI HWDEPATIPR PERVSPWEVE PFASSASLNL TQPVVKSKRP RPVDIPSSEI  420
TTNSAASAFW FHGSTHSHEL TQLGSAAEVQ SRETCGVWPS SQKEINTNGS CIRTEGIWPS  480
SPHVNVSLDL FSDSPEDNKT VTAHPDYLSP GSSMLNNGPI NDHVEKRTKS KTSLGCRLFG  540
IDLTKNSQTT APPERESAIM ISSSAKGSSS TAIPEADRVH NLDASKSSNE QKQLIPDVSP  600
KETQSKQGST LSMRTRTKVQ MQGVAVGRAV DLTVLKGYND LIDELEKMFE IKGELRTRNK  660
WAVVFTDDEN DKMLVGDDPW PEFVKMVRKI YIYSSEEVKK MSTRCKLNAS SFEGEGTVMS  720
SDSEHGVET

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	408	412	KRPRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61830.1	0.0	ARF family protein