PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023893013.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

TCP

Protein Properties

Length: 355aa MW: 39133.5 Da PI: 8.6152

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023893013.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	102.1	9.5e-32	48	177	2	129
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa 95 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i el+ ++ ++ +++ ++++ ++ +s+ ++g +++ + XP_023893013.1 48 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKQEINELPPLPIPPGNFSlDPSNIEVGVSQCNEGFKMNGNF 142 689*************************************************************9999988875555555555555554444444 PP TCP 96 .kskksqksaasalnlakesrakarararertrek 129 + +s s+++ ++ ++ rak+++ ar + ++ XP_023893013.1 143 eWEGSSALSKSNLWSSDAFWRAKSKEAARGTNPKE 177 22222222222233333355555555555533222 PP

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence
MISRSKEADF SDKQEGNSID GKITRDSSSS TPWLRLKDPR IVRVSRAFGG KDRHSKVCTI 60 RGLRDRRVRL SVPTAIQLYD LQDRLGLNQP SKVVDWLLNA AKQEINELPP LPIPPGNFSL 120 DPSNIEVGVS QCNEGFKMNG NFEWEGSSAL SKSNLWSSDA FWRAKSKEAA RGTNPKENWT 180 KRNEVEGNES HGAQVSSNNF LPRASHPSLP AGLLNTAIPY NYQWDPSNFP PTHYGSHGFS 240 SQTEDQPSYS VMSLPSTLSL STGGPQILVC PPGTTQPFFP SHAMASGETD MRQVNHFQML 300 SSSSQTHLPN SLTPPVYPTS QTIRSFNSNV TPPKPLHSPT SSGCQPNNDQ EFPSK

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence

MISRSKEADF SDKQEGNSID GKITRDSSSS TPWLRLKDPR IVRVSRAFGG KDRHSKVCTI  60
RGLRDRRVRL SVPTAIQLYD LQDRLGLNQP SKVVDWLLNA AKQEINELPP LPIPPGNFSL  120
DPSNIEVGVS QCNEGFKMNG NFEWEGSSAL SKSNLWSSDA FWRAKSKEAA RGTNPKENWT  180
KRNEVEGNES HGAQVSSNNF LPRASHPSLP AGLLNTAIPY NYQWDPSNFP PTHYGSHGFS  240
SQTEDQPSYS VMSLPSTLSL STGGPQILVC PPGTTQPFFP SHAMASGETD MRQVNHFQML  300
SSSSQTHLPN SLTPPVYPTS QTIRSFNSNV TPPKPLHSPT SSGCQPNNDQ EFPSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02150.1	2e-39	TCP family protein