PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023892734.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 338aa MW: 36180.1 Da PI: 9.1194

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023892734.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.3	3.1e-17	35	82	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEdell ++k+ G g+W+t +++ g+ R++k+c++rw +yl XP_023892734.1 35 RGPWTPEEDELLSSYIKKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 82 89****************************99**********97 PP
2	Myb_DNA-binding	46.9	6.4e-15	93	133	6	48
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l XP_023892734.1 93 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 133 89*************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence
MRNPSSSSAA GTGRGGGGGS SGKVTPCCSK VGLKRGPWTP EEDELLSSYI KKEGEGRWRT 60 LPKRAGLLRC GKSCRLRWMN YLRPSVKRGQ IAPDEEDLIL RLHRLLGNRW SLIAGRIPGR 120 TDNEIKNYWN THLSKKLISQ GIDPRTHKPL NPDSSSSGGT GGNNAKASSS KTNRTVPNPN 180 KSSPATSPVV EERTPSGSGI ITIKDSGYFQ SANLDPYHAS GIVINGGYAT LPNSDGSAGI 240 GLRSNNNGLS PEDEDDINYG SDDVFSSFLN SLINEEAFTA QHQFQQQTIT NGIASVSADP 300 LISITASGFG LGAGWESALM TSTFNQSDTK RPVNDQIE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	5e-84	MYB family protein