PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023890258.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C3H

Protein Properties

Length: 338aa MW: 37808.3 Da PI: 7.3557

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023890258.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	47.3	3.2e-15	261	285	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ +++tGtC+yGd C+FaHg XP_023890258.1 261 KTELCNKWQQTGTCPYGDHCQFAHG 285 9***********************8 PP
2	zf-CCCH	22	3e-07	298	322	1	25
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 yktelCr +++ tC+yG rC+F H XP_023890258.1 298 YKTELCRMVLAGDTCPYGHRCHFRH 322 9********55********88 PP

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence
MENDASPPST TSTTTATPTP PREETVKTTL HLENQNFGID FASLYHSIFP PKSPLPTTTT 60 TTTSISLKSS PSTCSSSIDD AVSSTQNRLN QARLILQYQE LNDHYDLCRA RLIDLLSEAE 120 SLRHENAELR LANAELLKLL SSQASFHNLL LSSSYPNRSF LQDLRRLSTE DEEHSDNRTN 180 LFDNRFSLPK SISVRSTGFT KVNLPPPPVA NTGPTPSRSS TRSRAPPSQL GSASQRVHMA 240 GKGEEDKEAV ELEVYNQGMM KTELCNKWQQ TGTCPYGDHC QFAHGITELR PVIRHPRYKT 300 ELCRMVLAGD TCPYGHRCHF RHTLTDQERS FLLAPPPR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	7e-67	C3H family protein