PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023890256.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C3H

Protein Properties

Length: 339aa MW: 37936.4 Da PI: 7.3557

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023890256.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	47.3	3.3e-15	262	286	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ +++tGtC+yGd C+FaHg XP_023890256.1 262 KTELCNKWQQTGTCPYGDHCQFAHG 286 9***********************8 PP
2	zf-CCCH	22	3e-07	299	323	1	25
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 yktelCr +++ tC+yG rC+F H XP_023890256.1 299 YKTELCRMVLAGDTCPYGHRCHFRH 323 9********55********88 PP

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence
MENDASPPST TSTTTATPTP PREETVKTTL HLENQNFGID FASLYHSIFP PKSPLPTTTT 60 TTTSISLKSS PSTCSSSIDD AVSSTQNRLN QARLILQYQE LNDHYDLCRA RLIDLLSEAE 120 SLRHENAELR LANAELLKLL SSQASFHNLL LSSSYPNRSF LQDLRRLSTE DEEHSDNRTN 180 LFDNRFSLPK SISVRSTGFT KVNLPPPPVA NTGPTPSRSS TRSRAPPSQL GSASQQRVHM 240 AGKGEEDKEA VELEVYNQGM MKTELCNKWQ QTGTCPYGDH CQFAHGITEL RPVIRHPRYK 300 TELCRMVLAG DTCPYGHRCH FRHTLTDQER SFLLAPPPR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	3e-67	C3H family protein