PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023889881.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB_related

Protein Properties

Length: 635aa MW: 70122.2 Da PI: 9.4445

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023889881.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.7	1.1e-07	580	629	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ XP_023889881.1 580 RRPFSVSEVEALVQAVEKLGTGRWRDVKLRAFdsaKHRTYVDLKDKWKTL 629 678999******************9988889************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 635 aa Download sequence
MVLQRRIEYG FNGYQVPVVP RASRSVRGRG PIRKKCDGNQ IRAFEILASV AGNILQESES 60 SVQSNAAGVK DQNHIFYANS KGEREDEGRS IKKDPCEGEN FDEKSFACVP GFQGHHKSYK 120 LNEFCEAHDN ISHKVGSASN TYDHSEVTCS AEKLATISRK NNCGYSSSRV VGGPPYFGDF 180 YEGKVGGILE SKLEDGPYRS RSGRDLSLTV AGSSEVPMEL DREPLALVDS ESDVKVTSSR 240 DCVNFVPFPR HCDNMKVVSR DDDENSVGCT QTSTIMKAYR SPPDIQQRRM KKLFPSRHWR 300 KSQKLKDGKK KPIYCNGRNF HIDERPQNIY PFKKRKFFSQ SPISASDGGS HHEGVINFPN 360 KRINGDNRSA AFGASSSVAS QQAPHESKGC DVKLSIKSFK VPELFIEIPA TATVGSLKRA 420 VMEAVTAVLG DGLHVGIMLQ GKEIRDDNKS LLQTGISQVQ KRHSLGFILE PGHTQITPPA 480 CTEHPSMVSG GKPRSLSRHL APLTLQPGAL YASPDCQLLN SGGSVERDLN IVPSLADSST 540 GNAMPETQAL VAVPATSMEP LTVVPFDQKS HPEFVRRRIR RPFSVSEVEA LVQAVEKLGT 600 GRWRDVKLRA FDSAKHRTYV DLKDKWKTLV HTARI

Sequence ? help Back to Top

Protein Sequence Length: 635 aa Download sequence

MVLQRRIEYG FNGYQVPVVP RASRSVRGRG PIRKKCDGNQ IRAFEILASV AGNILQESES  60
SVQSNAAGVK DQNHIFYANS KGEREDEGRS IKKDPCEGEN FDEKSFACVP GFQGHHKSYK  120
LNEFCEAHDN ISHKVGSASN TYDHSEVTCS AEKLATISRK NNCGYSSSRV VGGPPYFGDF  180
YEGKVGGILE SKLEDGPYRS RSGRDLSLTV AGSSEVPMEL DREPLALVDS ESDVKVTSSR  240
DCVNFVPFPR HCDNMKVVSR DDDENSVGCT QTSTIMKAYR SPPDIQQRRM KKLFPSRHWR  300
KSQKLKDGKK KPIYCNGRNF HIDERPQNIY PFKKRKFFSQ SPISASDGGS HHEGVINFPN  360
KRINGDNRSA AFGASSSVAS QQAPHESKGC DVKLSIKSFK VPELFIEIPA TATVGSLKRA  420
VMEAVTAVLG DGLHVGIMLQ GKEIRDDNKS LLQTGISQVQ KRHSLGFILE PGHTQITPPA  480
CTEHPSMVSG GKPRSLSRHL APLTLQPGAL YASPDCQLLN SGGSVERDLN IVPSLADSST  540
GNAMPETQAL VAVPATSMEP LTVVPFDQKS HPEFVRRRIR RPFSVSEVEA LVQAVEKLGT  600
GRWRDVKLRA FDSAKHRTYV DLKDKWKTLV HTARI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	9e-82	MYB_related family protein