PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023888904.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

bHLH

Protein Properties

Length: 754aa MW: 80579.7 Da PI: 6.3678

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023888904.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.6	3.4e-16	482	528	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K++Ka++L +A+eY+k Lq XP_023888904.1 482 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 528 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 754 aa Download sequence
MPLSELYRMA KGKLESTREK NTTCSNDLSF LPENDLFELV WENGQILKQG QSSRARKSPT 60 RNNFQSHCLP SYTSKIRDKD IGNGSNSKMG KFGGMESVLN EIPMSVPSDE MDLSQDDGMM 120 PWLNYPIDDS LQHEYCSEFL PELSGVTVNE LSNQNNLASI DKRSSCNLVY RDCHTNSVND 180 VVSLGQGNVS KVSSVGVGEA TRPRTTPLYP SSSQQCQTSF SSLRSRVTDG AGNNTSSVMH 240 HAVCGDSTLV ASAAAGFPTI KMQKKDQMSS NNNSNLMNFS HFSRPAALVK ANLQNMGLMA 300 GSDLSSMERI TSKDKGSAAS IKLPPESTHI KSISGLQKES SSHCQPLAAP APVPAPSKVD 360 LKPSEDKPVE ETVASKQSEA VCPDEASRND NISNQVFSES ATKGLPDGEK TTEPVVASSS 420 VCSGNSVERA SDDLTHNLKR KFRDTEESEC HSEDIEEESI GAKKAASGRA GTGSKRSRAA 480 EVHNLSERRR RDRINEKMRA LQELIPNCNK VDKASMLDEA IEYLKTLQLQ VQIMSMGAGF 540 YMPPMILPTG IQHMSAPHMA HFSPMGIGMG MGMGMGMGMG YGMGMPDMNV GPSGYPMIQV 600 PPMQGAHFPS PPLSGHTAMH GMAGSNLQMF GLPGQGLPMP MPRAPLIPLS GGPVMKSATG 660 LNACGVVGPV ENVDSAPASS SKDPMQNVNS QAMQITGASS SMTQTSSQCP ATNARFEPSS 720 LVQNNGQVSD VVGSTAVNSA NGNDLLPCKP ACYD

Sequence ? help Back to Top

Protein Sequence Length: 754 aa Download sequence

MPLSELYRMA KGKLESTREK NTTCSNDLSF LPENDLFELV WENGQILKQG QSSRARKSPT  60
RNNFQSHCLP SYTSKIRDKD IGNGSNSKMG KFGGMESVLN EIPMSVPSDE MDLSQDDGMM  120
PWLNYPIDDS LQHEYCSEFL PELSGVTVNE LSNQNNLASI DKRSSCNLVY RDCHTNSVND  180
VVSLGQGNVS KVSSVGVGEA TRPRTTPLYP SSSQQCQTSF SSLRSRVTDG AGNNTSSVMH  240
HAVCGDSTLV ASAAAGFPTI KMQKKDQMSS NNNSNLMNFS HFSRPAALVK ANLQNMGLMA  300
GSDLSSMERI TSKDKGSAAS IKLPPESTHI KSISGLQKES SSHCQPLAAP APVPAPSKVD  360
LKPSEDKPVE ETVASKQSEA VCPDEASRND NISNQVFSES ATKGLPDGEK TTEPVVASSS  420
VCSGNSVERA SDDLTHNLKR KFRDTEESEC HSEDIEEESI GAKKAASGRA GTGSKRSRAA  480
EVHNLSERRR RDRINEKMRA LQELIPNCNK VDKASMLDEA IEYLKTLQLQ VQIMSMGAGF  540
YMPPMILPTG IQHMSAPHMA HFSPMGIGMG MGMGMGMGMG YGMGMPDMNV GPSGYPMIQV  600
PPMQGAHFPS PPLSGHTAMH GMAGSNLQMF GLPGQGLPMP MPRAPLIPLS GGPVMKSATG  660
LNACGVVGPV ENVDSAPASS SKDPMQNVNS QAMQITGASS SMTQTSSQCP ATNARFEPSS  720
LVQNNGQVSD VVGSTAVNSA NGNDLLPCKP ACYD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	487	492	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	1e-47	bHLH family protein