PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023887414.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

bHLH

Protein Properties

Length: 271aa MW: 30408.3 Da PI: 7.5689

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023887414.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.9	2.8e-06	163	209	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h+ +Er RR++i ++ L+el+P + +k + a +L + ++Y++sL XP_023887414.1 163 THSLAERVRRQKISYKLRCLQELVPGC----HKAMGMAVMLDEIINYVHSL 209 8*************************9....67788889999999998887 PP

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence
MSDFQEQLQY FKPSIPSSEI TRDINLMNQL VQPNASIMAN FSITDLTVDD FLSFQQLECQ 60 SGMAQNLPGT SHSNSLNELP IVYAITSTRD VFHESKKRKV MELSTSSSES ISLAASGDDL 120 KDNNSSTKKN SLRKGKKRSS EKERDKQGEV VHVRAKRGQA TDTHSLAERV RRQKISYKLR 180 CLQELVPGCH KAMGMAVMLD EIINYVHSLK NQVEFLSMEL ATACSSYNLI LETGATEKAQ 240 GTNSLNQSHG MENLVRDRYG EQNCLHSTWP L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	128	138	KKNSLRKGKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25330.1	1e-42	bHLH family protein