PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023886250.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

RAV

Protein Properties

Length: 360aa MW: 41102.3 Da PI: 7.7656

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023886250.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	31.3	5.2e-10	50	96	2	54
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 ++kGV ++g W A+I+ + +r++lg+f +++eAa a++ a+ kl+ XP_023886250.1 50 KFKGVV-PQQNGHWGAQIYA------NhQRIWLGTFKSEKEAAMAYDSAAIKLR 96 789996.566899**999......44******99**********98 PP
2	B3	87	1.6e-27	172	276	1	87
EEEE-..-HHHHTT-EE--HHH.HTT..................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 f+k+ltpsdv+k++rlv+pkk+a ++ +g+ +++l+++d+ +sW+++++y+++s+++v+t+GW++Fvk+++Lk++ XP_023886250.1 172 FQKELTPSDVGKLNRLVIPKKYAVRYfpyicesmednaaaaaagDGNGVDDIELVFYDKLMKSWKFRYCYWRSSQSFVFTRGWNRFVKEKKLKAN 266 99****************************99999888888855556999*************************************** PP -EEEEEE-SS CS B3 78 DfvvFkldgr 87 D+++F+ +r XP_023886250.1 267 DIITFYSCER 276 ****4433 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MEEDASSMIS SANKMNATAE TSDSNNTYYT LLGCKRMRHE NNNNASSLAK FKGVVPQQNG 60 HWGAQIYANH QRIWLGTFKS EKEAAMAYDS AAIKLRSGDS HRNFPWTERT AQEPEFQKHY 120 STEAVLNMIR DGSYPSKFAA FLRTQSQSKD MGFSLKQTKV HGDGQFSCSQ LFQKELTPSD 180 VGKLNRLVIP KKYAVRYFPY ICESMEDNAA AAAAGDGNGV DDIELVFYDK LMKSWKFRYC 240 YWRSSQSFVF TRGWNRFVKE KKLKANDIIT FYSCERGENA KEGETFCLID VIYNGGDSKN 300 CLVEGVNEVQ LELDLNLGKM FTYKMDEDDK KFKEEKILSV LDPIQKVDDK GFRLFGVNIN

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MEEDASSMIS SANKMNATAE TSDSNNTYYT LLGCKRMRHE NNNNASSLAK FKGVVPQQNG  60
HWGAQIYANH QRIWLGTFKS EKEAAMAYDS AAIKLRSGDS HRNFPWTERT AQEPEFQKHY  120
STEAVLNMIR DGSYPSKFAA FLRTQSQSKD MGFSLKQTKV HGDGQFSCSQ LFQKELTPSD  180
VGKLNRLVIP KKYAVRYFPY ICESMEDNAA AAAAGDGNGV DDIELVFYDK LMKSWKFRYC  240
YWRSSQSFVF TRGWNRFVKE KKLKANDIIT FYSCERGENA KEGETFCLID VIYNGGDSKN  300
CLVEGVNEVQ LELDLNLGKM FTYKMDEDDK KFKEEKILSV LDPIQKVDDK GFRLFGVNIN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51120.1	1e-109	RAV family protein