PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023884946.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family Trihelix
Protein Properties Length: 349aa    MW: 38687.4 Da    PI: 9.5265
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023884946.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.61.4e-1718100272
        trihelix   2 WtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 
                     Wt +e++ Li+a++ ++er  ++             +++p+W++v ++++++g+ rs++qC++kw+nl ++ykk+++ e++ +
  XP_023884946.1  18 WTPDETMILIDAKKMDDERRTKRTssgdtssegrnkSIEPRWKWVEDYCWRKGCLRSQNQCNDKWDNLMRDYKKVRDYERRIA 100
                     *************966666654322344445555559*****************************************99874 PP
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    
MAEQGGKSIM RDYRKGNWTP DETMILIDAK KMDDERRTKR TSSGDTSSEG RNKSIEPRWK  60
WVEDYCWRKG CLRSQNQCND KWDNLMRDYK KVRDYERRIA ERGEGNNVEG SYWKIERNER  120
KERNLPTNMS PQIYQALVEV VEKKLGAIVS QRVVVGTSGV PMSVASNPNI GFVMDRPASL  180
PPVQHHIPTP TTTTTTPPPT LALPAPPAPN LPPLPSLTAP IPALTCSQHT PTVDSDTSEH  240
SDSPAKRRRK GGESGEGTSG TANASSSSHE VGTAISKSAS IIAEALQASE AREERRHREL  300
LSLHERRLKI EESKTEISRQ GINGLVDAIN KLADSIHALA SHKTQSAPK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.13e-57Trihelix family protein