PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023884784.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family C3H
Protein Properties Length: 381aa    MW: 41335.7 Da    PI: 9.7645
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023884784.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.53.4e-11226126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    yk elCr+f+r G C+yG++C++ Hg
  XP_023884784.1  2 YKKELCRNFQR-GNCRYGESCRYLHG 26
                    9**********.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    
MYKKELCRNF QRGNCRYGES CRYLHGNQQQ HQQQPKSVVF GSNQQQNSNP FGFGVQNTSQ  60
SRGGADFASK QNQPKPFQNT WTRSTSTTPG GALRQSDNSA QSANHKCTDP ETCKRQIAED  120
LNNERPLWKL TCYGHSRNLP SEIVGDISYE ELRAAAYDDN RRGVSLQSIV ERERNLVNSK  180
LVEFDNFLRK PNAVPPNSTL ASQSPFSGAR PNAFPGTAQN SAPPLVTSFS QLGASQIGGL  240
GIMPSTPSNN AFAQPNAFPN SSPMSSAFGT NNFPYKSEGA FSFQNPTQTP GSSITSNTAG  300
FSNGGNIIGG SNSFFPPVAP AQISISTSNN SPIFPNGPNF NTGGPAITNV QLGFQKKHLQ  360
MDLFGKNASG IRCIRFELFI L
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.15e-72C3H family protein