PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023883788.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C3H

Protein Properties

Length: 419aa MW: 47285.1 Da PI: 7.6617

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023883788.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17	1.1e-05	7	30	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC +++ G C++ +C+FaHg XP_023883788.1 7 FKTKLCVLYQK-GRCSR-QSCSFAHG 30 69*******.*.*****9 PP

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence
MVERKLFKTK LCVLYQKGRC SRQSCSFAHG DSELRGFSAS YSGRRDYQGS DLRDKLARRH 60 SPSRRYPPVR DAGGRQMLRE FSSSRSLERK RKRRKKQDFD GQGDFSGSLR MLEGNEDQVK 120 EGKIVSTDSK DVLEEQVDLE ESTQEADSLT SRIQELEAQL LKEKEEHKRI TSKIKKFVKA 180 HNRYSRIQDE LKRSQVRLQK LGDQLGSDIS RNGANEEDSI NILSDGENIG SPVTSQHNEL 240 QNDASPGKKR LCVNLYPSEE PKQGGHMDKT IRFKKLSRWN VQPAQSNRNE IELMKKAVND 300 GIDSHRPLAN EGKHKRGKTV PTSIISADKM KGLESALVVP STSMAGHVLE EEVEIELDKI 360 EVVKTADTGI EKEPACEIIG VPLPLPPPPP IHQNNYSLHE GDDENVDVDG LEMVHVDIV

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence

MVERKLFKTK LCVLYQKGRC SRQSCSFAHG DSELRGFSAS YSGRRDYQGS DLRDKLARRH  60
SPSRRYPPVR DAGGRQMLRE FSSSRSLERK RKRRKKQDFD GQGDFSGSLR MLEGNEDQVK  120
EGKIVSTDSK DVLEEQVDLE ESTQEADSLT SRIQELEAQL LKEKEEHKRI TSKIKKFVKA  180
HNRYSRIQDE LKRSQVRLQK LGDQLGSDIS RNGANEEDSI NILSDGENIG SPVTSQHNEL  240
QNDASPGKKR LCVNLYPSEE PKQGGHMDKT IRFKKLSRWN VQPAQSNRNE IELMKKAVND  300
GIDSHRPLAN EGKHKRGKTV PTSIISADKM KGLESALVVP STSMAGHVLE EEVEIELDKI  360
EVVKTADTGI EKEPACEIIG VPLPLPPPPP IHQNNYSLHE GDDENVDVDG LEMVHVDIV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	89	94	RKRKRR
2	89	95	RKRKRRK
3	89	96	RKRKRRKK
4	90	95	KRKRRK
5	90	96	RKRKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21810.1	5e-40	C3H family protein