PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023883424.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C3H

Protein Properties

Length: 708aa MW: 78496.1 Da PI: 6.1471

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023883424.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.1	1e-05	120	138	11	26
GTS...--TTTTT-SS-SS CS zf-CCCH 11 rtG...tCkyGdrCkFaHg 26 +tG C+y d+C+F+H+ XP_023883424.1 120 KTGditSCPYSDKCRFSHD 138 7788889***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 708 aa Download sequence
MDESATSTIT TTEESVVKNP ELSLVPPPPS EPADSHSKSH SELTTEELVA KSIAPINKHF 60 LRPPPLRPSS NDAVSQTTAN AAPAPSQSSF VKDKKSKRQL KRERRQDQKS SKNICPLIAK 120 TGDITSCPYS DKCRFSHDVE GFKAQKPEDI EGECPFLDSE EPCPYGLACR FLGTHKSKDK 180 DGVLGGKKKM SDECNGLNKD VQKLLWKNKM KFPKADAKLK ALGLLGKAKS KTKIVEEKED 240 DETVPGTCHV TDGNGVSEVN GDLDTKLESA EVPEEDDLDI KDGSDEPPMK KPKSVIEENG 300 SSAKANNGDV TFMEKVVGES CTQTEPEAGM DVTTPEGDRS LKLHPREKKI IDFREKLYLA 360 PLTTVGNLPF RRVCKVLGAD VTCGEMAMCT NLLQGQASEW ALLRRHSSED LFGVQICGAY 420 PDTVARAMEL IDQECTVDFI DINMGCPIDI VVEKGAGSAL LNKPMRIKSI IEAASGTVDK 480 PITVKVRTGF FEGKNRIDSL ITDIGNWGAS AVTIHGRSRQ QRYSKLANWD YVYQCARKAP 540 DALQVMGNGD VFSYLDWNTR KADCPELATC MIARGALIKP WIFTEIKEQR HWDITSGERL 600 NILKDFVRLG LEHWGSDTKG VETTRRFLLE WLSYTCRYIP VGLLDVIPQR LNWRPPSYYG 660 RDDLETLMVS DSAADWVRIS EMLLGKVPDG FTFAPKHKSN AYDRAENG

Sequence ? help Back to Top

Protein Sequence Length: 708 aa Download sequence

MDESATSTIT TTEESVVKNP ELSLVPPPPS EPADSHSKSH SELTTEELVA KSIAPINKHF  60
LRPPPLRPSS NDAVSQTTAN AAPAPSQSSF VKDKKSKRQL KRERRQDQKS SKNICPLIAK  120
TGDITSCPYS DKCRFSHDVE GFKAQKPEDI EGECPFLDSE EPCPYGLACR FLGTHKSKDK  180
DGVLGGKKKM SDECNGLNKD VQKLLWKNKM KFPKADAKLK ALGLLGKAKS KTKIVEEKED  240
DETVPGTCHV TDGNGVSEVN GDLDTKLESA EVPEEDDLDI KDGSDEPPMK KPKSVIEENG  300
SSAKANNGDV TFMEKVVGES CTQTEPEAGM DVTTPEGDRS LKLHPREKKI IDFREKLYLA  360
PLTTVGNLPF RRVCKVLGAD VTCGEMAMCT NLLQGQASEW ALLRRHSSED LFGVQICGAY  420
PDTVARAMEL IDQECTVDFI DINMGCPIDI VVEKGAGSAL LNKPMRIKSI IEAASGTVDK  480
PITVKVRTGF FEGKNRIDSL ITDIGNWGAS AVTIHGRSRQ QRYSKLANWD YVYQCARKAP  540
DALQVMGNGD VFSYLDWNTR KADCPELATC MIARGALIKP WIFTEIKEQR HWDITSGERL  600
NILKDFVRLG LEHWGSDTKG VETTRRFLLE WLSYTCRYIP VGLLDVIPQR LNWRPPSYYG  660
RDDLETLMVS DSAADWVRIS EMLLGKVPDG FTFAPKHKSN AYDRAENG