PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023883335.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

SRS

Protein Properties

Length: 360aa MW: 39810.4 Da PI: 7.2351

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023883335.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	227.1	3.2e-70	116	283	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskk 98 g+++CqdCGnqakkdC h RCRtCCksrgf+C+thvkstWvpaakrrerqqqlaa++++++++++++++++++++++++q+++++++ +++k+ XP_023883335.1 116 GGMNCQDCGNQAKKDCPHLRCRTCCKSRGFHCQTHVKSTWVPAAKRRERQQQLAALQHQQEQQEEQQQQQQQQQQQQQQQQQQEQQQFRGENPKR 210 789****************************************************99999998888888888777777777777777777776 PP DUF702 99 eletss.................lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + + + +P+ev+s+avfrcvrvs+++d +e++aYqtav+igGhvfkGiLydqG+++ XP_023883335.1 211 QRDNHGlaciripnttsglelgqFPAEVNSPAVFRCVRVSAMEDPDEQYAYQTAVNIGGHVFKGILYDQGPKD 283 666666999***********************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MAGLFYLGGR EGSHNKQEEE EDKQENNSNS LYLYRNEEIY NNNNNSSSNN KGFELWPQQQ 60 YYPPQQNLSN FYSFGVGPSS RRISNHNLND VSDHHESSRS GFTLMRQGGL GGLGGGGMNC 120 QDCGNQAKKD CPHLRCRTCC KSRGFHCQTH VKSTWVPAAK RRERQQQLAA LQHQQEQQEE 180 QQQQQQQQQQ QQQQQQQQEQ QQFRGENPKR QRDNHGLACI RIPNTTSGLE LGQFPAEVNS 240 PAVFRCVRVS AMEDPDEQYA YQTAVNIGGH VFKGILYDQG PKDRYTTGGE CSSGGGGGGG 300 GGGTQPLNLI TAGTTSTNVT TASTSNNPTT TTTLLDPSSL FPAPINAFLA GTQFFPPPRS

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MAGLFYLGGR EGSHNKQEEE EDKQENNSNS LYLYRNEEIY NNNNNSSSNN KGFELWPQQQ  60
YYPPQQNLSN FYSFGVGPSS RRISNHNLND VSDHHESSRS GFTLMRQGGL GGLGGGGMNC  120
QDCGNQAKKD CPHLRCRTCC KSRGFHCQTH VKSTWVPAAK RRERQQQLAA LQHQQEQQEE  180
QQQQQQQQQQ QQQQQQQQEQ QQFRGENPKR QRDNHGLACI RIPNTTSGLE LGQFPAEVNS  240
PAVFRCVRVS AMEDPDEQYA YQTAVNIGGH VFKGILYDQG PKDRYTTGGE CSSGGGGGGG  300
GGGTQPLNLI TAGTTSTNVT TASTSNNPTT TTTLLDPSSL FPAPINAFLA GTQFFPPPRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	4e-75	SRS family protein