PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023882792.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 557aa MW: 60947.9 Da PI: 8.9341

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023882792.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16	3.4e-05	95	117	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H XP_023882792.1 95 FICEICNKGFQRDQNLQLHRRGH 117 89*******************88 PP
2	zf-C2H2	12.6	0.00042	171	193	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ XP_023882792.1 171 WKCDKCSKRYAVQSDWKAHSKTC 193 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 557 aa Download sequence
MMKGLMFQVQ QQQQQLQQQV VEENMSNLTS ASGEASVSSG NRTEIGTNYS QQYFAPPPTQ 60 TQPVVKKKRN LPGNPDPEAE VIALSPKTLM ATNRFICEIC NKGFQRDQNL QLHRRGHNLP 120 WKLKQRTSKE IRKKVYVCPE PSCVHHDPSR ALGDLTGIKK HFCRKHGEKK WKCDKCSKRY 180 AVQSDWKAHS KTCGTREYRC DCGTLFSRRD SFITHRAFCD ALAEESARAI TTNNPLLSSQ 240 PGSSTPHILN LPQHQYNHQD LHAFTLKKEQ QSFNLRPEIP PWLSFPGPPP PQPLDLSSSS 300 SSIFSTRLDH HNHHQEFTQS HQDFSLHETP NPNPSLGPTL PPYQSVPSPH MSATALLQKA 360 AQMGATMSSK TGSSSQGMML RPTHQAHMSA ASDSSNNTTG NKFGLNLSSH EEMGTTGTGF 420 THSLAVPYGN KAACSSAASA GASSTTGVAS GVVHTPSFLH DMVSSLSSAT GFEGTSFEDA 480 FGGILNSKKT TTTSNNNTGH FTRNDESGTG GGEGLTRDFL GLRALSHGDI LNIAGLGHCI 540 NTSNEHQNQP QKPWQGR

Sequence ? help Back to Top

Protein Sequence Length: 557 aa Download sequence

MMKGLMFQVQ QQQQQLQQQV VEENMSNLTS ASGEASVSSG NRTEIGTNYS QQYFAPPPTQ  60
TQPVVKKKRN LPGNPDPEAE VIALSPKTLM ATNRFICEIC NKGFQRDQNL QLHRRGHNLP  120
WKLKQRTSKE IRKKVYVCPE PSCVHHDPSR ALGDLTGIKK HFCRKHGEKK WKCDKCSKRY  180
AVQSDWKAHS KTCGTREYRC DCGTLFSRRD SFITHRAFCD ALAEESARAI TTNNPLLSSQ  240
PGSSTPHILN LPQHQYNHQD LHAFTLKKEQ QSFNLRPEIP PWLSFPGPPP PQPLDLSSSS  300
SSIFSTRLDH HNHHQEFTQS HQDFSLHETP NPNPSLGPTL PPYQSVPSPH MSATALLQKA  360
AQMGATMSSK TGSSSQGMML RPTHQAHMSA ASDSSNNTTG NKFGLNLSSH EEMGTTGTGF  420
THSLAVPYGN KAACSSAASA GASSTTGVAS GVVHTPSFLH DMVSSLSSAT GFEGTSFEDA  480
FGGILNSKKT TTTSNNNTGH FTRNDESGTG GGEGLTRDFL GLRALSHGDI LNIAGLGHCI  540
NTSNEHQNQP QKPWQGR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	134	KLKQRTSKEIRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-123	C2H2 family protein