PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023880716.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 357aa MW: 39408.3 Da PI: 8.3627

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023880716.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.7	9.5e-17	100	145	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+q+G+ +W++Ia+ + gR++k+c++rw++ XP_023880716.1 100 RGHWRPAEDAKLKELVAQYGPQNWNLIAENLE-GRSGKSCRLRWFNQ 145 899***************************.*********996 PP
2	Myb_DNA-binding	55.2	1.6e-17	152	195	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l+ a+k++G++ W+ Iar ++ gRt++ +k++w+ XP_023880716.1 152 RRAFTEEEEERLLGAHKLYGNK-WAMIARLFP-GRTDNAVKNHWHV 195 678*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence
MSPQHLKSDG NGFSGYKNVN FMLPPPPPPP PLGVIVGHPL EKDSKTSEMG FQILNPSIEK 60 RVGDGYLGDE RKGLSVKFGE EEEGKSSGAG KSGHTKLCAR GHWRPAEDAK LKELVAQYGP 120 QNWNLIAENL EGRSGKSCRL RWFNQLDPRI NRRAFTEEEE ERLLGAHKLY GNKWAMIARL 180 FPGRTDNAVK NHWHVIMARK HREQSSVYRR RKPSSQVLTD MTLQNNACSE STHSSTMDES 240 GSTCTDLSLT PSSNKVPQSL ITKFCPVQQY HQSYGSKMGS LVDVDKFYCT GNGFYQPGLM 300 GTVMGVDPSG HSDSNSEVSA AESVATNKTN ISVSGENENL NEKIKMPFID FLGVGAT

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence

MSPQHLKSDG NGFSGYKNVN FMLPPPPPPP PLGVIVGHPL EKDSKTSEMG FQILNPSIEK  60
RVGDGYLGDE RKGLSVKFGE EEEGKSSGAG KSGHTKLCAR GHWRPAEDAK LKELVAQYGP  120
QNWNLIAENL EGRSGKSCRL RWFNQLDPRI NRRAFTEEEE ERLLGAHKLY GNKWAMIARL  180
FPGRTDNAVK NHWHVIMARK HREQSSVYRR RKPSSQVLTD MTLQNNACSE STHSSTMDES  240
GSTCTDLSLT PSSNKVPQSL ITKFCPVQQY HQSYGSKMGS LVDVDKFYCT GNGFYQPGLM  300
GTVMGVDPSG HSDSNSEVSA AESVATNKTN ISVSGENENL NEKIKMPFID FLGVGAT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69560.1	7e-74	MYB family protein