PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023878455.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 541aa MW: 59828.7 Da PI: 8.4713

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023878455.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.8	0.0015	474	496	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C ++F++ L H r+H XP_023878455.1 474 HECPICFRVFRSGQALGGHKRSH 496 79******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence
MEEDQQKKFV CKFCNRRFSC GKALGGHIRT HMNKNSAEEE DEVEVEADGN VNANNVVKFQ 60 SLNGGRRSKR DLSGFEADGL DSGYGLRENP RKTWRFVDSS SATLLRERVC KECGKGFQSL 120 KALCGHMACH SDKEKLISKF EDNSLMDSHS DTETSGPTQL RRSKRTRYKA VDAYPSGYTM 180 ANGSSSVSGI EQEQEEVAMC LMMLSRDSGQ RNGLNSLAES SDNNSVVLEA KSCSIDVKMK 240 ITMKNSRDCA SNINEIVKLK KQIDKKLKIS EISLSDNSDS GYFRNGPKKA ESDVSVDGSY 300 WGDRFKKPKV YYGSGIGGLD SELGKSSSFE LRKESINDEG YDPVGTECDL RMKAKNDSFN 360 PEFSEGSNKK IKNDSSKVKG SKNAHKRGKY ECLNCNMSFH SHRALGGHRA SHTKSNGYCE 420 AIYESGENST GTGSLAVPKP QSKHVESCSV KTSTSQSFSG HSKKRMGPRK SKGHECPICF 480 RVFRSGQALG GHKRSHFIGG SEERTLVLKQ ELPEFHGLID LNLPAPTDEE ANGDDAQFMP 540 W

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence

MEEDQQKKFV CKFCNRRFSC GKALGGHIRT HMNKNSAEEE DEVEVEADGN VNANNVVKFQ  60
SLNGGRRSKR DLSGFEADGL DSGYGLRENP RKTWRFVDSS SATLLRERVC KECGKGFQSL  120
KALCGHMACH SDKEKLISKF EDNSLMDSHS DTETSGPTQL RRSKRTRYKA VDAYPSGYTM  180
ANGSSSVSGI EQEQEEVAMC LMMLSRDSGQ RNGLNSLAES SDNNSVVLEA KSCSIDVKMK  240
ITMKNSRDCA SNINEIVKLK KQIDKKLKIS EISLSDNSDS GYFRNGPKKA ESDVSVDGSY  300
WGDRFKKPKV YYGSGIGGLD SELGKSSSFE LRKESINDEG YDPVGTECDL RMKAKNDSFN  360
PEFSEGSNKK IKNDSSKVKG SKNAHKRGKY ECLNCNMSFH SHRALGGHRA SHTKSNGYCE  420
AIYESGENST GTGSLAVPKP QSKHVESCSV KTSTSQSFSG HSKKRMGPRK SKGHECPICF  480
RVFRSGQALG GHKRSHFIGG SEERTLVLKQ ELPEFHGLID LNLPAPTDEE ANGDDAQFMP  540
W

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	1e-100	C2H2 family protein