PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023878115.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

bHLH

Protein Properties

Length: 490aa MW: 55382.9 Da PI: 8.4769

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023878115.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.1	0.00036	428	459	18	54
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksL 54 s++ L +++P + +Kls iLe+A++YI L XP_023878115.1 428 SKMRVLSRVVPGC-----RKLSLPVILEEATDYIAAL 459 6666777777777.....8***************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence
MKQGSGFSHM VICHLKTNLG CMNPLLYYRI REEDVLASIY QCEFCWESII QRRLLSPEWS 60 KCTWVEFSFI SDTLDVSALK CGVELVFQHN LEEFTLAQCI TSYNGPSTSN EILPFTGHDK 120 FSDSDSHEDQ TNGTSSQYSY EGTHTRCQLY QTAAKDFHPS SSYNCCFPPS KFQDWFSHQN 180 HGHSVTMDLP SNLYHDSNCM GLVLYASFSI HGDPNFILSH LNSGKSHSLY CQCQMSMTNV 240 DDQTIAFSTS KEEITWLLEL GEFIWISYVP GEPFKNMLQH CNHIKASFVS DWPGVIVQKC 300 ALQLLYHQED DKNHNKCKSE AQQQIYSSKL PQTLSQVHVS PPPLSATATA TQRDRAVREA 360 VDRVLAMATK GKRRWSYAFL TNWRRRKFQK KHRKQQRVVS ATGTSRSPKK HKVSVLRLKG 420 KSLLAVKSKM RVLSRVVPGC RKLSLPVILE EATDYIAALE MQVRAMTTLA NLLSGSSSSS 480 ASSSSAPPPS

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence

MKQGSGFSHM VICHLKTNLG CMNPLLYYRI REEDVLASIY QCEFCWESII QRRLLSPEWS  60
KCTWVEFSFI SDTLDVSALK CGVELVFQHN LEEFTLAQCI TSYNGPSTSN EILPFTGHDK  120
FSDSDSHEDQ TNGTSSQYSY EGTHTRCQLY QTAAKDFHPS SSYNCCFPPS KFQDWFSHQN  180
HGHSVTMDLP SNLYHDSNCM GLVLYASFSI HGDPNFILSH LNSGKSHSLY CQCQMSMTNV  240
DDQTIAFSTS KEEITWLLEL GEFIWISYVP GEPFKNMLQH CNHIKASFVS DWPGVIVQKC  300
ALQLLYHQED DKNHNKCKSE AQQQIYSSKL PQTLSQVHVS PPPLSATATA TQRDRAVREA  360
VDRVLAMATK GKRRWSYAFL TNWRRRKFQK KHRKQQRVVS ATGTSRSPKK HKVSVLRLKG  420
KSLLAVKSKM RVLSRVVPGC RKLSLPVILE EATDYIAALE MQVRAMTTLA NLLSGSSSSS  480
ASSSSAPPPS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	372	387	KRRWSYAFLTNWRRRK
2	384	412	RRRKFQKKHRKQQRVVSATGTSRSPKKHK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06590.2	6e-25	bHLH family protein