PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023877763.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

bHLH

Protein Properties

Length: 524aa MW: 57669.6 Da PI: 5.023

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023877763.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.9	1.3e-11	340	382	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A+eY+k+L XP_023877763.1 340 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 382 79*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 524 aa Download sequence
MLSRANGNVW MDDTEDPDSA SWVKTNNNNS NKEEMGSLSS FKSMLEMEDE WYNINLANNS 60 LQSHTDMGGL TFSSSLPDPE SLLLNPVDSS SSCSPSSSVF TNFDPSQVHY FLHPKPTLSS 120 LINTLPSNPG FDLGCEVGFL ETQATNTLAN RGVGDLSNFT DLGSNSQINS PNLCLDPQFQ 180 TSRLLNFPET GSSSGFDGFK GFEENSGNAL FLNRAKLLRP LESFPSVGAQ PTLFQKRAAL 240 RKNLEESGAN LEISKAVEVD KGKREMGEEN ERKRKLSIGD DIEDVSFDGS GLNYDSDEFL 300 ENEKAEMNVK NGGNSSNGNS TVTLGEQKGK KKGLPAKNLM AERRRRKKLN DRLYMLRSVV 360 PKISKMDRAS ILGDAIEYLK ELLQRINDLH IELESTPPGT SLTPTTSFHP LTPTPSTLPS 420 RIKEELCPSS LPSPNGQAAR VEVRLREGRA VNIHMFCGRR PGLLLSTMRA LDNLGLDIQQ 480 AVISCFNGFA MDIFRAEQCK EGQDVHPDQI KAVLLDSAGF HNMM

Sequence ? help Back to Top

Protein Sequence Length: 524 aa Download sequence

MLSRANGNVW MDDTEDPDSA SWVKTNNNNS NKEEMGSLSS FKSMLEMEDE WYNINLANNS  60
LQSHTDMGGL TFSSSLPDPE SLLLNPVDSS SSCSPSSSVF TNFDPSQVHY FLHPKPTLSS  120
LINTLPSNPG FDLGCEVGFL ETQATNTLAN RGVGDLSNFT DLGSNSQINS PNLCLDPQFQ  180
TSRLLNFPET GSSSGFDGFK GFEENSGNAL FLNRAKLLRP LESFPSVGAQ PTLFQKRAAL  240
RKNLEESGAN LEISKAVEVD KGKREMGEEN ERKRKLSIGD DIEDVSFDGS GLNYDSDEFL  300
ENEKAEMNVK NGGNSSNGNS TVTLGEQKGK KKGLPAKNLM AERRRRKKLN DRLYMLRSVV  360
PKISKMDRAS ILGDAIEYLK ELLQRINDLH IELESTPPGT SLTPTTSFHP LTPTPSTLPS  420
RIKEELCPSS LPSPNGQAAR VEVRLREGRA VNIHMFCGRR PGLLLSTMRA LDNLGLDIQQ  480
AVISCFNGFA MDIFRAEQCK EGQDVHPDQI KAVLLDSAGF HNMM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	330	348	KKKGLPAKNLMAERRRRKK
2	342	349	ERRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26744.1	1e-119	bHLH family protein