PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023877642.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

GATA

Protein Properties

Length: 565aa MW: 61100.7 Da PI: 5.2903

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023877642.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	55.6	7e-18	487	521	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ Cgt ++p WR+gp g+ktLCnaCGl+++kk++ XP_023877642.1 487 CADCGTLDSPEWRKGPKGPKTLCNACGLRWAKKEK 521 ********************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 565 aa Download sequence
MYSGQSGGRA VGADPGSRSR YGHDAATSGY GAGNGMNPAM GGLSDFSMAG LDGDAAAAFM 60 TDLDIDMALS MDIDDAAYQQ QPQSQRQQTM QEQTVAQSAL RQSQAEGHTS STYDENFPHS 120 VTAENEVSSP LLPDANINVA GAGPLPTGFG MPAPNGSSTL TEFTKRRNWS QRIIEELKDF 180 LHILTPDGRI LYVSPSCQSI TGYNSRAITG KFIGDFVHPD DSGVFMREFN ESIASGNPLR 240 FFYRFKKEDG TYVIFECDGH PHLATEPGQN FDDNQGQQGQ GFNSQCKGLF MMARPYPTKN 300 AALLDSFLEH KIENERLMKR IADLKREEAE ESAEQDKLYK EHANASAMST GTRTESPAVL 360 PRATNERQGN TPPPPNNYQG MPPPEKPSVS NAALTRQNLD SVLSSQRPDS IADKMSRYEA 420 NNTHLESIEL LTGLRYRDGE RSHGISTGDV SPALIRGDAG IAILLDRDRD GNKKEKKKLK 480 VADEYVCADC GTLDSPEWRK GPKGPKTLCN ACGLRWAKKE KKRGDDGKPD SPSGMALSGE 540 TAGSGSITSG MMPPGLTAQN STGSS

Sequence ? help Back to Top

Protein Sequence Length: 565 aa Download sequence

MYSGQSGGRA VGADPGSRSR YGHDAATSGY GAGNGMNPAM GGLSDFSMAG LDGDAAAAFM  60
TDLDIDMALS MDIDDAAYQQ QPQSQRQQTM QEQTVAQSAL RQSQAEGHTS STYDENFPHS  120
VTAENEVSSP LLPDANINVA GAGPLPTGFG MPAPNGSSTL TEFTKRRNWS QRIIEELKDF  180
LHILTPDGRI LYVSPSCQSI TGYNSRAITG KFIGDFVHPD DSGVFMREFN ESIASGNPLR  240
FFYRFKKEDG TYVIFECDGH PHLATEPGQN FDDNQGQQGQ GFNSQCKGLF MMARPYPTKN  300
AALLDSFLEH KIENERLMKR IADLKREEAE ESAEQDKLYK EHANASAMST GTRTESPAVL  360
PRATNERQGN TPPPPNNYQG MPPPEKPSVS NAALTRQNLD SVLSSQRPDS IADKMSRYEA  420
NNTHLESIEL LTGLRYRDGE RSHGISTGDV SPALIRGDAG IAILLDRDRD GNKKEKKKLK  480
VADEYVCADC GTLDSPEWRK GPKGPKTLCN ACGLRWAKKE KKRGDDGKPD SPSGMALSGE  540
TAGSGSITSG MMPPGLTAQN STGSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36620.1	8e-12	GATA family protein