PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023876255.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

Trihelix

Protein Properties

Length: 490aa MW: 52977.3 Da PI: 8.2986

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023876255.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	54.7	2.6e-17	96	198	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..............rergferspkqCkekwenlnkrykkikegekkr...tsessst 78 +W++ + +L+ea++e+ ++l+rg+l++ +Weev++++ +++ +s +qCk+k++nl+kryk + ++++ t +++s+ XP_023876255.1 96 EWSDTAIACLLEAYTEKYNELNRGNLRGRDWEEVAEAVtdrcggggvggggdKSKATYKSVEQCKNKIDNLKKRYKVELQRMSATtgsTTTTHSH 190 5*************************************************999*******************8877766552224566679 PP trihelix 79 cpyfdqle 86 + +f+++e XP_023876255.1 191 WHWFKKIE 198 99999987 PP

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence
MASSDDFPLI DSSSSSPNPH AHSLLYALTR HYSSAYYSTE APFNDAESDP NNRPGGPPGA 60 PTPPKRTASP YNYYKKHKCS NSGESENESY RKDREEWSDT AIACLLEAYT EKYNELNRGN 120 LRGRDWEEVA EAVTDRCGGG GVGGGGDKSK ATYKSVEQCK NKIDNLKKRY KVELQRMSAT 180 TGSTTTTHSH WHWFKKIEAI VGNSGTANKG GGSDEDRSIS HARSPRQSKR YMSSNAALTN 240 NLKSKPISNL KWRRVVFKIS GTALAGNCQS IDPKVAMQVA KEVASACRIG VEVAIVVGGR 300 NFFCGDTWVS ATGLDRPTAY QIGMMATVMN SILLQSALEK LGVQTRVQSA FAMPEVAEPY 360 SRQRAIRHLE KGRVVIFGGV GAGTGNPLFT TDTAAALRAS ELNADAVLKG TSVNGVYDFH 420 SGNSNVILDH ISYRDAISST ITSMDLMAIT YCEENGIPVV VFNLLEPGNI SRALCGDQVG 480 TLIDQAGSIS

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence

MASSDDFPLI DSSSSSPNPH AHSLLYALTR HYSSAYYSTE APFNDAESDP NNRPGGPPGA  60
PTPPKRTASP YNYYKKHKCS NSGESENESY RKDREEWSDT AIACLLEAYT EKYNELNRGN  120
LRGRDWEEVA EAVTDRCGGG GVGGGGDKSK ATYKSVEQCK NKIDNLKKRY KVELQRMSAT  180
TGSTTTTHSH WHWFKKIEAI VGNSGTANKG GGSDEDRSIS HARSPRQSKR YMSSNAALTN  240
NLKSKPISNL KWRRVVFKIS GTALAGNCQS IDPKVAMQVA KEVASACRIG VEVAIVVGGR  300
NFFCGDTWVS ATGLDRPTAY QIGMMATVMN SILLQSALEK LGVQTRVQSA FAMPEVAEPY  360
SRQRAIRHLE KGRVVIFGGV GAGTGNPLFT TDTAAALRAS ELNADAVLKG TSVNGVYDFH  420
SGNSNVILDH ISYRDAISST ITSMDLMAIT YCEENGIPVV VFNLLEPGNI SRALCGDQVG  480
TLIDQAGSIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.1	1e-171	Trihelix family protein