PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023876217.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family C3H
Protein Properties Length: 356aa    MW: 39015.7 Da    PI: 8.2477
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023876217.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.64.3e-08127147526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C+ f++ G Ck Gd+C FaHg
  XP_023876217.1 127 ACPEFRK-GNCKKGDSCEFAHG 147
                     7******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    
MMIGNPNPTV QVPPWDPFDD QASQISSPMA NFSVNYNANA GNGDHSLLLD SFAALHRYLP  60
SNENDESYSF SDVVQDAFSC DQFRMYEFKV RRCARARSHD WTECPYAHPG EKARRRDPLK  120
YHYSGTACPE FRKGNCKKGD SCEFAHGVFE CWLHPNRYRT QPCKDGPSCG RKVCFFAHSP  180
QQLRVLTQQS GRESGSKFVS SPTSILVSPP VSPQSDSPPL SPTEGGLGGF GSGKSVSELV  240
ASMRKMKMGG CGGWGNQVGS LSPSGFGSPR ASIVRPGFCS TPSTPTTPTR NVARSGLGPF  300
DLWETKCEEE PAMERVESGR GLRAQMYAKL SKENSLRRVD SAVSGPDFGW VSELVK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-107C3H family protein