PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023875992.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
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Family | C2H2 | ||||||||
Protein Properties | Length: 403aa MW: 44760.3 Da PI: 8.6352 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 22.3 | 3.4e-07 | 229 | 251 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk F+r nL+ H+r H XP_023875992.1 229 HYCQVCGKGFKRDANLRMHMRAH 251 68*******************99 PP | |||||||
2 | zf-C2H2 | 10.7 | 0.0016 | 324 | 347 | 1 | 23 |
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ C+ k Fs s+L++H + + XP_023875992.1 324 YVCKRCNqKQFSVLSDLRTHEKHC 347 9*******************9876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence |
MLSGANATSC FQNVPLQIYS VNEDVVSASS LEGNSASEPH PNSFLYNFSV LKDKVHQVQS 60 LVSILINTDH SQPEPATSFA VASMSTVIQE IISSATSMMF ICQQMGLGPT AAGSTSTDEL 120 HHGHHGQRHQ TRFSQPNFGG NRAGNIGQGF FSSETLADCW YGGETFNNYG TNKDETRSGA 180 VGNNVNRVER RDQVAQGGDT SEAILERITS KDYDIIELDA ADLLAKYTHY CQVCGKGFKR 240 DANLRMHMRA HGDEYKTSAA LSNPMKNNNG GASGNRDGLL KLPRKYSCPQ EGCRWNRKHA 300 KFQPLKSMIC VKNHYKRSHC PKMYVCKRCN QKQFSVLSDL RTHEKHCGDQ KWQCSCGTTF 360 SRKDKLMGHV ALFIGHTPAT ISLSKLAKVE QQTLQMQIDD RHR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22890.1 | 1e-112 | C2H2 family protein |