PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023875452.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 560aa MW: 60636.1 Da PI: 4.8233

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023875452.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.7	1.1e-17	39	86	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lvd+vk++G g+W+++ ++ g+ R++k+c++rw ++l XP_023875452.1 39 KGPWTSTEDAILVDYVKKHGEGNWNAVQKHSGLFRCGKSCRLRWANHL 86 79******************************************9986 PP
2	Myb_DNA-binding	50.9	3.7e-16	92	135	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE++ ++++++++G++ W++ a++++ gRt++++k++w++ XP_023875452.1 92 KGAFTAEEEQVIIELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 135 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 560 aa Download sequence
MTCKRDDSDD EMLPKDQADS PLINESNGGS SGGGAVLKKG PWTSTEDAIL VDYVKKHGEG 60 NWNAVQKHSG LFRCGKSCRL RWANHLRPNL KKGAFTAEEE QVIIELHAKM GNKWARMAAH 120 LPGRTDNEIK NYWNTRIKRR QRAGLPLYPP EVTVQAYQEG QLDQNTGGVD GEDRGQHDPL 180 QSNNYDIPDV IFDNLSANQG ILPYVPELPD ISVSNMLLKG VGSSPYCTLP PMLPQQKRFR 240 ESTDLFPGSS GSVGNGFRSF EQFREDTCHK VARSIGLSSP LDSDPTTKNS QSFGVIQGSH 300 SLSNGNSSAS EPTYGALKLE LPSLQYTETD LGSWGTSLPR PLLESVDAFI QSPPPSGAFE 360 ADCSSPRNSG LLDALLHESK TLRSAKNQSS DKSSNSSSAT PGDKADSSTL NICETEWEDC 420 GDPISPLGHS ATSLFSERTP ISACGSSLDE QLPAETFTGI AVKSASVDPA STLDMEKETT 480 TRLNFSRPDV LLASDWLQQS SGYIKEQSIM SDAIATLLGD DLASDYKHLA SGTSISSQGW 540 GLNSCPWNNM PAVCQMSDHP

Sequence ? help Back to Top

Protein Sequence Length: 560 aa Download sequence

MTCKRDDSDD EMLPKDQADS PLINESNGGS SGGGAVLKKG PWTSTEDAIL VDYVKKHGEG  60
NWNAVQKHSG LFRCGKSCRL RWANHLRPNL KKGAFTAEEE QVIIELHAKM GNKWARMAAH  120
LPGRTDNEIK NYWNTRIKRR QRAGLPLYPP EVTVQAYQEG QLDQNTGGVD GEDRGQHDPL  180
QSNNYDIPDV IFDNLSANQG ILPYVPELPD ISVSNMLLKG VGSSPYCTLP PMLPQQKRFR  240
ESTDLFPGSS GSVGNGFRSF EQFREDTCHK VARSIGLSSP LDSDPTTKNS QSFGVIQGSH  300
SLSNGNSSAS EPTYGALKLE LPSLQYTETD LGSWGTSLPR PLLESVDAFI QSPPPSGAFE  360
ADCSSPRNSG LLDALLHESK TLRSAKNQSS DKSSNSSSAT PGDKADSSTL NICETEWEDC  420
GDPISPLGHS ATSLFSERTP ISACGSSLDE QLPAETFTGI AVKSASVDPA STLDMEKETT  480
TRLNFSRPDV LLASDWLQQS SGYIKEQSIM SDAIATLLGD DLASDYKHLA SGTSISSQGW  540
GLNSCPWNNM PAVCQMSDHP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.3	1e-135	MYB family protein