PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023875074.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 547aa MW: 61414.7 Da PI: 6.5862

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023875074.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.7	8.6e-05	402	424	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp+C+ +F+++ ++ H tH XP_023875074.1 402 YTCPKCKSVFNTSQLFAAHVGTH 424 9******************9877 PP

Sequence ? help Back to Top
Protein Sequence Length: 547 aa Download sequence
MSMHFNCSQS NQIGLGFQNN SIDHGQMFSQ QSNFGLNNRV QQGGGLFSSH QLMGGTNNAN 60 NPSVGLHQNR EFTSHVNQPS APGLGQLGLG QNEMVPHVNQ PSTNSLGQLG HGQLGLGQHE 120 MISLVNQPRT NGLGQLGFGQ LGLCPTVTEV RRTYVTPQRV QVHSVVDYFP VQNQAPVVHQ 180 SEMSITEYRT TQLLTANSTR DRFFSPPNPN DQIHIQGQQP NSFQSLNRLP MSNQQQVNHP 240 LITERDPQGN HFRNPFQYQH PSYYQSHSQK FNQYQNPSFN NPSLMQNQSV FGSNVQNQFY 300 NPSYNFQNQP RKATLQLIEE DEHSDHKGKV KEVLDAEPLN SYVPNTMDQD PKENQPPNHT 360 ISQNQSVDTT NAASDDSDDG DDNETEDGGR IHSLPCKKYG PYTCPKCKSV FNTSQLFAAH 420 VGTHYKDESR AEKRKRQIAK YRRKNLRLVH VGDALTVVPV SFDLPPRKNR PKQKNVSKKA 480 KKDSEEVEDE DAKVDSVEDE EKDATMASKE VEEKDKAEMQ EQAALPALPD KKAIIAVVKD 540 EPLELMD

Sequence ? help Back to Top

Protein Sequence Length: 547 aa Download sequence

MSMHFNCSQS NQIGLGFQNN SIDHGQMFSQ QSNFGLNNRV QQGGGLFSSH QLMGGTNNAN  60
NPSVGLHQNR EFTSHVNQPS APGLGQLGLG QNEMVPHVNQ PSTNSLGQLG HGQLGLGQHE  120
MISLVNQPRT NGLGQLGFGQ LGLCPTVTEV RRTYVTPQRV QVHSVVDYFP VQNQAPVVHQ  180
SEMSITEYRT TQLLTANSTR DRFFSPPNPN DQIHIQGQQP NSFQSLNRLP MSNQQQVNHP  240
LITERDPQGN HFRNPFQYQH PSYYQSHSQK FNQYQNPSFN NPSLMQNQSV FGSNVQNQFY  300
NPSYNFQNQP RKATLQLIEE DEHSDHKGKV KEVLDAEPLN SYVPNTMDQD PKENQPPNHT  360
ISQNQSVDTT NAASDDSDDG DDNETEDGGR IHSLPCKKYG PYTCPKCKSV FNTSQLFAAH  420
VGTHYKDESR AEKRKRQIAK YRRKNLRLVH VGDALTVVPV SFDLPPRKNR PKQKNVSKKA  480
KKDSEEVEDE DAKVDSVEDE EKDATMASKE VEEKDKAEMQ EQAALPALPD KKAIIAVVKD  540
EPLELMD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18490.1	9e-19	C2H2 family protein