PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023873896.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family BBR-BPC
Protein Properties Length: 280aa    MW: 31204.8 Da    PI: 10.1869
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023873896.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind343.84.1e-10512801301
       GAGA_bind   1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalse.kkaavaerd.........maflqrdkalaernkalverdnkl 81 
                     mddd+ + rn+gyyep+  +k +lglqlmss+a+rd+k     r+ n  + +  ++++++rd         +++  rd+++++        ++k+
  XP_023873896.1   1 MDDDALNMRNWGYYEPS--FKGHLGLQLMSSMADRDSKNflpgRDPNSMMVNpANGTYHPRDcvvseppvpINY-VRDSWVNQ--------RDKY 84 
                     9***9999*******99..********************9***998887766157899****999999999999.89999999........789* PP

       GAGA_bind  82 lalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskk 176
                     l++l+++         ++ vl++t+ ++slq+     l+++     + e   +  i ++++++ke  ++kkrq a+ pk++kakk++k    +++
  XP_023873896.1  85 LNMLPTNP--------NYAVLPDTSGAHSLQM-----LQPPDLS--RDE--RVGRI-DEPPVKKEGGQMKKRQGASAPKAPKAKKPRK----PRD 157
                     ****9655........4899************.....4444443..222..22333.3466777888888999999999999999999....455 PP

       GAGA_bind 177 kvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLek 271
                     + +++   +r+k  kk++dlv+ng+++D+s++P+PvCsCtGa++qCY+WG+GGWqSaCCtt++S+yPLP+stkrrgaRiagrKmSqgafkk+Lek
  XP_023873896.1 158 NGNASV--QRVKPAKKNMDLVINGIDMDISGIPIPVCSCTGAPQQCYRWGCGGWQSACCTTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEK 250
                     566666..79************************************************************************************* PP

       GAGA_bind 272 LaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     LaaeGy+++n++DL++hWA+HGtnkfvtir
  XP_023873896.1 251 LAAEGYNFANAIDLRTHWARHGTNKFVTIR 280
                     *****************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    
MDDDALNMRN WGYYEPSFKG HLGLQLMSSM ADRDSKNFLP GRDPNSMMVN PANGTYHPRD  60
CVVSEPPVPI NYVRDSWVNQ RDKYLNMLPT NPNYAVLPDT SGAHSLQMLQ PPDLSRDERV  120
GRIDEPPVKK EGGQMKKRQG ASAPKAPKAK KPRKPRDNGN ASVQRVKPAK KNMDLVINGI  180
DMDISGIPIP VCSCTGAPQQ CYRWGCGGWQ SACCTTNVSM YPLPMSTKRR GARIAGRKMS  240
QGAFKKVLEK LAAEGYNFAN AIDLRTHWAR HGTNKFVTIR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.11e-111BBR-BPC family protein