PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023873786.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 344aa MW: 38858.6 Da PI: 8.1293

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023873786.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.9	1.9e-06	180	199	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp+C k+F+r nL+ H+ XP_023873786.1 180 FSCPICFKTFNRYNNLQMHM 199 89*****************9 PP
2	zf-C2H2	13.1	0.00028	266	286	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C +Cgk F k + ++H +++ XP_023873786.1 266 CRKCGKAFAVKGDWRTHEKNC 286 *****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MADPYSNFFT RSRFNFMPTH SHYSSFPSYS NPILNSYPPQ YSNSNYILNN KPSIQYCQPS 60 NIPSTSSPSS PPLKEALPLI NNLSPTRQEE HESSSTSAME EEEDKNMNKD DGDETVTVAL 120 HIGLPSTNTD LGYSRLISTP SDVTVKDGVR EVSWYPLGTL NKGQYWIPTP SQILIGPTQF 180 SCPICFKTFN RYNNLQMHMW GHGSQYRKGP DSLKGAQPTA MLRLPCYCCA PGCKHNIEHP 240 RAKPLKDFRT LQTHYKRKHG TKPFLCRKCG KAFAVKGDWR THEKNCGKIW YCICGSDFKH 300 KRSLKDHIKA FGNGHGAFGI DCFQEVDDPT SDIEHDGDSS MPNE

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MADPYSNFFT RSRFNFMPTH SHYSSFPSYS NPILNSYPPQ YSNSNYILNN KPSIQYCQPS  60
NIPSTSSPSS PPLKEALPLI NNLSPTRQEE HESSSTSAME EEEDKNMNKD DGDETVTVAL  120
HIGLPSTNTD LGYSRLISTP SDVTVKDGVR EVSWYPLGTL NKGQYWIPTP SQILIGPTQF  180
SCPICFKTFN RYNNLQMHMW GHGSQYRKGP DSLKGAQPTA MLRLPCYCCA PGCKHNIEHP  240
RAKPLKDFRT LQTHYKRKHG TKPFLCRKCG KAFAVKGDWR THEKNCGKIW YCICGSDFKH  300
KRSLKDHIKA FGNGHGAFGI DCFQEVDDPT SDIEHDGDSS MPNE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-123	C2H2 family protein