PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023873311.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 481aa MW: 54058.8 Da PI: 8.353

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023873311.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.1	1.8e-17	144	190	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd +l+++vkq+G + W+ Ia+++ gR +kqc++rw+++l XP_023873311.1 144 KGQWTDEEDRKLLKLVKQYGVRKWAQIAEKLV-GRAGKQCRERWHNHL 190 799***************************.***********97 PP
2	Myb_DNA-binding	57.1	4.1e-18	197	238	2	45
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + W++eE+ +lv+a+++ G++ W+ Ia++++ gRt++++k++w+ XP_023873311.1 197 DGWSEEEERILVEAHTKVGNR-WAEIAKCIP-GRTENSIKNHWN 238 56*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence
MAEGGEASGV NGGGVCRHAN SQNNPPICRF GPPLTAIDRF LYGQNHFSHQ QTHTNIARNK 60 DVLVLDNGLC NFPPPRGAIV GGVSWPRVQE VNSVDEFFVD REPLNWTYER NTNMGFNEES 120 KVVVKSSKGL GKKAKKANSA TLIKGQWTDE EDRKLLKLVK QYGVRKWAQI AEKLVGRAGK 180 QCRERWHNHL RPDIKKDGWS EEEERILVEA HTKVGNRWAE IAKCIPGRTE NSIKNHWNAT 240 KRRQNSRRKN KQSDRQKGKP HSSVLQDYIK SKNMSNTSMI TTTPTQSTTT TANTSSSTLS 300 EDPSNHLNYY IPEPSESTTD DSSTLISQTY DDELLFMQNF FANQINQPHV DNNNKVMAHI 360 DHHKAPSTSK PYDFFQNNGD HLLTGNVTEC GFASLTSNSS LQLNNNFQVK ESSTPTTHLY 420 SDLYLSYLLN GSANSLPPND YSSYNNNINT DFQADQAYSS NGKKEMDLIE LVSSAQFLPG 480 Q

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence

MAEGGEASGV NGGGVCRHAN SQNNPPICRF GPPLTAIDRF LYGQNHFSHQ QTHTNIARNK  60
DVLVLDNGLC NFPPPRGAIV GGVSWPRVQE VNSVDEFFVD REPLNWTYER NTNMGFNEES  120
KVVVKSSKGL GKKAKKANSA TLIKGQWTDE EDRKLLKLVK QYGVRKWAQI AEKLVGRAGK  180
QCRERWHNHL RPDIKKDGWS EEEERILVEA HTKVGNRWAE IAKCIPGRTE NSIKNHWNAT  240
KRRQNSRRKN KQSDRQKGKP HSSVLQDYIK SKNMSNTSMI TTTPTQSTTT TANTSSSTLS  300
EDPSNHLNYY IPEPSESTTD DSSTLISQTY DDELLFMQNF FANQINQPHV DNNNKVMAHI  360
DHHKAPSTSK PYDFFQNNGD HLLTGNVTEC GFASLTSNSS LQLNNNFQVK ESSTPTTHLY  420
SDLYLSYLLN GSANSLPPND YSSYNNNINT DFQADQAYSS NGKKEMDLIE LVSSAQFLPG  480
Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58850.1	8e-59	MYB family protein