PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023872549.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MIKC_MADS

Protein Properties

Length: 238aa MW: 27369 Da PI: 9.0279

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023872549.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.8	2.8e-28	10	58	2	50
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 ri+n++ rqvtfskRrng+lKKA ELS+LCdaev viifsst klyey+ XP_023872549.1 10 RIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGVIIFSSTSKLYEYA 58 8***********************************************8 PP
2	K-box	92.6	7e-31	78	171	6	99
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + s+ +++ + +q+e+a+L ++++ Lq+ +R+l+Ge+L+ Ls+k+Lq+Le+qLe slk +R+ K++ll+++i+el +k + +++en++L +k+e XP_023872549.1 78 QPSNPATDVKFWQREAANLSQQLKYLQECHRQLMGEELSGLSVKDLQNLENQLEMSLKGVRASKEQLLTDEIKELNQKGHLIHQENTELYTKIE 171 334678899**********************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KARELSILCD AEVGVIIFSS TSKLYEYANT 60 SLKSVIGRYS KAKEDQHQPS NPATDVKFWQ REAANLSQQL KYLQECHRQL MGEELSGLSV 120 KDLQNLENQL EMSLKGVRAS KEQLLTDEIK ELNQKGHLIH QENTELYTKI EHFRKENAEL 180 KKKVYRARNV NEASCSSAPY TISNEYDLHA NIRLQLSQPQ PQNDEEPEKA MELGLQLH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37940.1	2e-94	MIKC_MADS family protein