PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023871725.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family GRAS
Protein Properties Length: 580aa    MW: 64887.2 Da    PI: 4.7827
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023871725.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS445.43.8e-1362115802374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++ Ll+cA a+++g+  +a+a++++l++++s +gdp qR+aay++e+Laar+a+s++ lykal+++e +   ss++laa+++++ev+P++kf+++
  XP_023871725.1 211 RQMLLDCAGALADGNVMEASAMISNLRNMVSIQGDPPQRIAAYMVEGLAARMASSGKCLYKALKCKEPP---SSDRLAAMQILFEVCPCFKFGYM 302
                     689*****************************************************************9...9********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     +aN a+ ea++ e+r+Hi+Dfdi+qG Q+++L+q++a+  ++pp++R+Tgv++pes+  s   l+ +g+rL+k+Ae+l+vpfef++ va++++ +
  XP_023871725.1 303 AANGAMIEAFKDEKRIHIVDFDINQGSQYITLIQTIANNLGKPPHVRLTGVDDPESVqrSVGGLKIIGQRLEKLAEALKVPFEFQA-VASKTSII 396
                     *******************************************************9989999************************.7******* PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     ++++L+++pgEal Vn+++qlh+++desvs+ ++rd++L++vksl+Pk+v+vveq++++n+++Fl rf+ea +yysa+f+sl+a+lpr+s++r++
  XP_023871725.1 397 TPSMLNCRPGEALLVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDVNTNTAPFLPRFVEAYNYYSAVFESLDATLPRKSQDRMN 491
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     vEr++l+r+ivn+vaceg+er+er e ++kWr+r+++aGF++ p++ k+ ++++ l+r++ ++ y+v++e g+l +gW++++L+++SaWr
  XP_023871725.1 492 VERQCLARDIVNIVACEGEERIERYEVAGKWRARMTMAGFTSCPMGPKVIDTIQNLIREYCDR-YKVKKEMGALHFGWEEKNLIVASAWR 580
                     *************************************************************66.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    
MSLVRSAGLS APSYRNSKLY SLKGSDDSPS LSTQILGSDK HKTIYVTDSY SSESYEKYFL  60
DSPTEELIQP SSSGISGNSV HPDGISMGTR NPFDISLMSM RHRDAYQSNF ESDYLECQSP  120
DPVDYDEDKM RLKLQELERA LLEDNDDDDD DDDDDDIFGT DHSMEIDGEW ADRVHNTLLH  180
DSPKESSSTD SNLSSISSNK EVSQVSPRTP RQMLLDCAGA LADGNVMEAS AMISNLRNMV  240
SIQGDPPQRI AAYMVEGLAA RMASSGKCLY KALKCKEPPS SDRLAAMQIL FEVCPCFKFG  300
YMAANGAMIE AFKDEKRIHI VDFDINQGSQ YITLIQTIAN NLGKPPHVRL TGVDDPESVQ  360
RSVGGLKIIG QRLEKLAEAL KVPFEFQAVA SKTSIITPSM LNCRPGEALL VNFAFQLHHM  420
PDESVSTVNQ RDQLLRMVKS LNPKLVTVVE QDVNTNTAPF LPRFVEAYNY YSAVFESLDA  480
TLPRKSQDRM NVERQCLARD IVNIVACEGE ERIERYEVAG KWRARMTMAG FTSCPMGPKV  540
IDTIQNLIRE YCDRYKVKKE MGALHFGWEE KNLIVASAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0GRAS family protein