PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023870498.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

Trihelix

Protein Properties

Length: 556aa MW: 64163.7 Da PI: 6.1398

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023870498.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	95	7.1e-30	112	197	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+Ckek+enl k+ykk+keg+ +r ++ +++++f+qlea XP_023870498.1 112 RWPRQETLTLLEIRSRLDSKFKETNQKGPLWDEVSRIMaEEHGYQRSGKKCKEKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 197 8***********************************999*************************98..55667*****85 PP
2	trihelix	65	1.6e-20	404	477	1	73
trihelix 1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 rW++ ev Li++r+++e r+++ g l+++lWee+++km + g+ rs + Ckekwe+++ +y k+ e +kk ++ XP_023870498.1 404 RWSEMEVSSLIQLRTSLELRFQEsGYLEEGLWEEIAAKMGSLGYDRSMVACKEKWESISIYYNKTMECNKKSKE 477 8*******************8467*****************************************99743 PP

Sequence ? help Back to Top
Protein Sequence Length: 556 aa Download sequence
MGDQYGLPDL RQFMAGRTHF PGMTQPTEPF FLQRNIVAAP PQLHYEPIMV GHEVLPRGLQ 60 VGFGHDSSTT SAATPNNTAT ITTTTSSAAT TTLCGSQIES GWMGYDAIGN TRWPRQETLT 120 LLEIRSRLDS KFKETNQKGP LWDEVSRIMA EEHGYQRSGK KCKEKFENLY KYYKKTKEGK 180 AGRQDGKHYR FFRQLEAIYG EASNNHASVS SSLPYHQSAR NNVIQQDNQE VVQNQRLCTE 240 SLSTFSNSSE FETSSSENNN DDDLSAIAFM MNQSMEKQKV MNERQSYQRT KKSWKAKVEE 300 FVDSQMRKIM DTQEAWMDRM LKTIENREQE RVSKEEEWRK KEAARFDQEV HELWAKERAW 360 VEARDAALME ALKKFIGKGL EVSPMAVETQ SHEENQVETI NNNRWSEMEV SSLIQLRTSL 420 ELRFQESGYL EEGLWEEIAA KMGSLGYDRS MVACKEKWES ISIYYNKTME CNKKSKEDLD 480 LTTSSSYFQL LNSYQGQEIP KHRPESMGLQ LMDEGLPPSS SNVGTNEVHR SCFQNEEEKL 540 WEKYGVKFNK GKNQRV

Sequence ? help Back to Top

Protein Sequence Length: 556 aa Download sequence

MGDQYGLPDL RQFMAGRTHF PGMTQPTEPF FLQRNIVAAP PQLHYEPIMV GHEVLPRGLQ  60
VGFGHDSSTT SAATPNNTAT ITTTTSSAAT TTLCGSQIES GWMGYDAIGN TRWPRQETLT  120
LLEIRSRLDS KFKETNQKGP LWDEVSRIMA EEHGYQRSGK KCKEKFENLY KYYKKTKEGK  180
AGRQDGKHYR FFRQLEAIYG EASNNHASVS SSLPYHQSAR NNVIQQDNQE VVQNQRLCTE  240
SLSTFSNSSE FETSSSENNN DDDLSAIAFM MNQSMEKQKV MNERQSYQRT KKSWKAKVEE  300
FVDSQMRKIM DTQEAWMDRM LKTIENREQE RVSKEEEWRK KEAARFDQEV HELWAKERAW  360
VEARDAALME ALKKFIGKGL EVSPMAVETQ SHEENQVETI NNNRWSEMEV SSLIQLRTSL  420
ELRFQESGYL EEGLWEEIAA KMGSLGYDRS MVACKEKWES ISIYYNKTME CNKKSKEDLD  480
LTTSSSYFQL LNSYQGQEIP KHRPESMGLQ LMDEGLPPSS SNVGTNEVHR SCFQNEEEKL  540
WEKYGVKFNK GKNQRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	2e-97	Trihelix family protein