PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023554782.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 362aa MW: 41564.3 Da PI: 8.39

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023554782.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.6	5.2e-14	161	212	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i+ Ave++k+L+ XP_023554782.1 161 QRMTHIAVERNRRKQMNEHLSVLRSLMPES---YVQRGDQASIVGGAVEFVKELE 212 79**************************...9****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MMISRTREEL YEAIQFCPSH VHLIYLFPFT LPFQQFLHFS SHSSLLSLSF FNTIPNQKPN 60 KMSLDALSSN DFFNFIIYDT ISAIPNTSPV LHDSSENTFF SDDTCSRHQD HQHGLEGSLK 120 PNRKRRPSES ESLRTASTRQ GKKKRKRKPR VCKNKEEAET QRMTHIAVER NRRKQMNEHL 180 SVLRSLMPES YVQRGDQASI VGGAVEFVKE LEHLLSTLEA KKLQVLQKEV DHQEQEINDN 240 KLFSFGSLLM NNSDHNYCSQ YSTKYTSKSK ASSADIEVTL IETHANLRIL STRSHRQLLK 300 LIAGLQALRL TILHLSLTDF HPLVLYSISL KVEEGCQLRS VDDIAAAAHH LVRIIEEETM 360 LC

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MMISRTREEL YEAIQFCPSH VHLIYLFPFT LPFQQFLHFS SHSSLLSLSF FNTIPNQKPN  60
KMSLDALSSN DFFNFIIYDT ISAIPNTSPV LHDSSENTFF SDDTCSRHQD HQHGLEGSLK  120
PNRKRRPSES ESLRTASTRQ GKKKRKRKPR VCKNKEEAET QRMTHIAVER NRRKQMNEHL  180
SVLRSLMPES YVQRGDQASI VGGAVEFVKE LEHLLSTLEA KKLQVLQKEV DHQEQEINDN  240
KLFSFGSLLM NNSDHNYCSQ YSTKYTSKSK ASSADIEVTL IETHANLRIL STRSHRQLLK  300
LIAGLQALRL TILHLSLTDF HPLVLYSISL KVEEGCQLRS VDDIAAAAHH LVRIIEEETM  360
LC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	123	145	RKRRPSESESLRTASTRQGKKKR
2	124	146	RKRRPSESESLRTASTRQGKKKR
3	142	148	KKKRKRK
4	143	148	KKRKRK
5	162	173	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22490.1	2e-61	bHLH family protein