PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023554657.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family C3H
Protein Properties Length: 435aa    MW: 49245.1 Da    PI: 7.7895
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023554657.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.8e-06831126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    +kt+lC  +++ G+C++ ++C+FaHg
  XP_023554657.1  8 FKTKLCVLYQK-GHCSR-PSCSFAHG 31
                    69*********.*****.*******8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    
MMIGRKLFKT KLCVLYQKGH CSRPSCSFAH GNAELRRFAG ASSGRQEYRE NDLRHKLDSR  60
HSPLQERDSR GRHGPREYSS SWSLERNSDH KRRKKDHGDS CTDYAGNLRI TDRSEERDRE  120
GKISSSSRDT LEGQLNKMQA DIEMAEHHRH QAEVYLDEKI QEVDSLTSRI QELESQLYNE  180
REECRRIKSK IKKFVKAHNR YSRIQXIIGR SQFRLQQLGD QLGSDVNKIG ANEEDSSVNI  240
VSDGEDPGYH AAGPLHHLHK DASASKRKLH VDQDIGGNSK RADLHKGSKE AVGRLRRISR  300
WNAHPAKSMY SKIEAVRNEN NDYIPKANES RQKRGKASNS VSTADKVRSL DAGVVVPLTS  360
MAAHAVNEEV DIELEVNNEV SDRRESTKEA ASGSVPLLPP PPSPIHEIYH SRYEGEDQNI  420
DVEVVDDESA GLDDA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.17e-52C3H family protein