PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023553874.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family B3
Protein Properties Length: 309aa    MW: 34910 Da    PI: 9.5256
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023553874.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.64.1e-17126215198
                     EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     f+k +++s+v+   +l lp +f+++h      e+ +ltl de+ ++++ k+  +k++    l++GW++F  +++L +gD++vF+l++ +ef  +v
  XP_023553874.1 126 FVKPMLQSHVTGGFWLGLPVHFCKAHlP---LEDEMLTLVDEDENEFQTKYLAEKTG----LSGGWRGFSIDHQLVDGDTLVFQLTKPTEF--KV 211
                     89************************53...34558***************555555....***********************9876666..88 PP

                     EEE- CS
              B3  95 kvfr 98 
                      ++r
  XP_023553874.1 212 YIIR 215
                     8887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    
MVESNLTYEE CRRQRLEENK KRMEELNLNK LADALKSSSP KSSPQLKRPR QPLDISSLSV  60
RRSSRFADKP PPSYKEEPIE PLAGLRRTYQ RRDLLNRVYA SDVERQYAID RARDLQSSLE  120
SRYPSFVKPM LQSHVTGGFW LGLPVHFCKA HLPLEDEMLT LVDEDENEFQ TKYLAEKTGL  180
SGGWRGFSID HQLVDGDTLV FQLTKPTEFK VYIIRAYNLE DKENTHGDSD VTQLERNGKG  240
NTGSGKGDHG EDSNVSLLEK SGKKVTRSSG RKTRANKSED KAANGEDSGV SQLETSGKRT  300
TRSASKGKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-88B3 family protein