PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023553250.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB_related

Protein Properties

Length: 359aa MW: 38975.1 Da PI: 10.4007

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023553250.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.5	1.8e-14	118	163	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++WT+eE+ ++ + k+lG+g+W+ I++ + ++Rt+ q+ s+ qky XP_023553250.1 118 KPWTEEEHRTFLAGLKKLGKGDWRGISKNFVTTRTPTQVASHAQKY 163 58*******************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MVRESPRKCS HCGLNGHNSR TCSNFLKGNN NYSNSSYYCV KLFGVNLMEN RDESMRKSLS 60 MGNLNLHSCN NVLDLNTAAA VYNVADDNSA SADNAGYLSD GFIHNKRRKA AHERKKGKPW 120 TEEEHRTFLA GLKKLGKGDW RGISKNFVTT RTPTQVASHA QKYFLRKMHA NEKKKRRASL 180 FDMPEIKNNV PQDCQASGET SLPKNNSSEN QQQVNNLPAQ LINRFPHLCL DAPHFVPPAT 240 GSAASAAANL HGIPYVVGVS PNVPILPLVN IGRRGGGGVM AMPKSPRSPN APMAGHPSGI 300 PPSPRTSPSR PILQQLQPSA IAVAASNFEA DALELKIGLP QSPQTQNLSS QTSGAIRVI

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MVRESPRKCS HCGLNGHNSR TCSNFLKGNN NYSNSSYYCV KLFGVNLMEN RDESMRKSLS  60
MGNLNLHSCN NVLDLNTAAA VYNVADDNSA SADNAGYLSD GFIHNKRRKA AHERKKGKPW  120
TEEEHRTFLA GLKKLGKGDW RGISKNFVTT RTPTQVASHA QKYFLRKMHA NEKKKRRASL  180
FDMPEIKNNV PQDCQASGET SLPKNNSSEN QQQVNNLPAQ LINRFPHLCL DAPHFVPPAT  240
GSAASAAANL HGIPYVVGVS PNVPILPLVN IGRRGGGGVM AMPKSPRSPN APMAGHPSGI  300
PPSPRTSPSR PILQQLQPSA IAVAASNFEA DALELKIGLP QSPQTQNLSS QTSGAIRVI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	173	177	KKKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61620.1	1e-56	MYB_related family protein